 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
RrC13412_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
NAC |
| Protein Properties |
Length: 311aa MW: 35930.4 Da PI: 5.0616 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC13412_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 178.3 | 2e-55 | 6 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka....eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
lppGfrFhPtdeelv +yL +kv+g+++el e+i+evd+yk+ePwdLp + k+ ++ ewyf+s+rdkky++g+r+nrat++gyWkatgkd++v s
RrC13412_p1 6 LPPGFRFHPTDEELVGYYLDRKVNGQTIEL-EIIPEVDLYKCEPWDLPGTEKSflpgNDMEWYFYSTRDKKYPNGSRTNRATRAGYWKATGKDRAVES 102
79****************************.99***************532334454788*************************************9 PP
NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
k+ ++g+kktLv+y+grap+g +t+Wvmheyrl
RrC13412_p1 103 -KKMKMGMKKTLVYYRGRAPHGLRTNWVMHEYRL 135
.8999***************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 311 aa
Download sequence Send
to blast |
MAPMSLPPGF RFHPTDEELV GYYLDRKVNG QTIELEIIPE VDLYKCEPWD LPGTEKSFLP 60
GNDMEWYFYS TRDKKYPNGS RTNRATRAGY WKATGKDRAV ESKKMKMGMK KTLVYYRGRA 120
PHGLRTNWVM HEYRLTHLPS SSPSSSIKES YALCRVFKKQ IQIPKRKDEE MMMGTSVGKE 180
KKEELEEENM WRKCEMERES EEDENLKIAS AETSSSELTQ GILLDEANNS SSFALHFSSS 240
LLDDHDQIFA NDSYLPYYTP LQLQDFPQLS MNEAQIMSID NSKQQDFQCR DSMNGTLDEI 300
FSFSSSATLP L
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 5e-55 | 1 | 160 | 15 | 169 | NAC domain-containing protein 19 |
| 3swm_B | 5e-55 | 1 | 160 | 15 | 169 | NAC domain-containing protein 19 |
| 3swm_C | 5e-55 | 1 | 160 | 15 | 169 | NAC domain-containing protein 19 |
| 3swm_D | 5e-55 | 1 | 160 | 15 | 169 | NAC domain-containing protein 19 |
| 3swp_A | 5e-55 | 1 | 160 | 15 | 169 | NAC domain-containing protein 19 |
| 3swp_B | 5e-55 | 1 | 160 | 15 | 169 | NAC domain-containing protein 19 |
| 3swp_C | 5e-55 | 1 | 160 | 15 | 169 | NAC domain-containing protein 19 |
| 3swp_D | 5e-55 | 1 | 160 | 15 | 169 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
