PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC13376_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 370aa    MW: 41803.6 Da    PI: 7.4443
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC13376_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94e-32190244155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k+r+rWt++LHe+Fve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  RrC13376_p1 190 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRI 244
                  68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.371187247IPR017930Myb domain
SuperFamilySSF466893.05E-17188244IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-28189245IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-23190245IPR006447Myb domain, plants
PfamPF002491.3E-8194243IPR001005SANT/Myb domain
PfamPF143793.1E-20274321IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MDNINFESSN ASQGSRLHLQ PQPPQPFNLQ DVNMNHYNQS SPWTSETFSG YTPYDCTSNQ  60
SFSVQCSSSK PYHALFPPYH HQSSDHPSVD QSQSMVPMQL LQNQYLKHQK SCANDFAATN  120
TSSSSYSLSF DARQDPQELC RRTYSTSNVT QLDFSSSHHQ AKQTHPRLSS PSFSTHGGSM  180
APNCGTVVNK TRIRWTQDLH EKFVECVNRL GGADKATPKA ILKLMDSEGL TIFHVKSHLQ  240
KYRIAKYIPD YQEGKFEKGS CSKELSQLDT KTGVQIKEAL QLQLDVQRHL HEQLEIQRNL  300
QLRIEEQGKQ LKIMIEQQQK TKECLLKSPN AEASLSLSAS DHSPPPFSIQ DAEALMLTTY  360
GDTQFQSKIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-23190247259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-23190247259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-23190247259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-23190247259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-23190247259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-23190247259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-23190247259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-23190247259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468228.10.0PREDICTED: myb family transcription factor PHL5-like
SwissprotQ0WVU30.0PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLA0A3P6AKJ90.0A0A3P6AKJ9_BRACM; Uncharacterized protein
STRINGBra028717.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54762748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.10.0G2-like family protein