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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
RrC13245_p1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
MYB |
| Protein Properties |
Length: 346aa MW: 39014.2 Da PI: 7.0213 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC13245_p1 | genome | MSU | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 49.3 | 1.1e-15 | 14 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48
+g+WT+eEd +lv +++++G+g+W++++ g + R+ k+c++rw +yl
RrC13245_p1 14 KGPWTPEEDIILVTYIQEHGPGNWRAVPTNTGmynlhsswLLRCSKSCRLRWTNYL 69
79****************************************************97 PP
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| 2 | Myb_DNA-binding | 47.1 | 5.3e-15 | 75 | 128 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrwqkyl 48
rg++T+ E++ +v++ ++lG++ +W++Ia++++ Rt++++k++w+++l
RrC13245_p1 75 RGNFTEHEEKMIVHLQALLGNRefdyfccRWAAIASYLP-QRTDNDIKNYWNTHL 128
89*************************************.************996 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 346 aa
Download sequence Send
to blast |
MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGMYNLH SSWLLRCSKS 60
CRLRWTNYLR PGIKRGNFTE HEEKMIVHLQ ALLGNREFDY FCCRWAAIAS YLPQRTDNDI 120
KNYWNTHLKK KLNKANQDSH QELDHSRDRS SLSSSPSSSS ANSNSNISRG QWERRLQTDI 180
QLAKKALSEA LSPAVEPSIN STLATTATAS SSSESRRSTS SACEFLRTQE TTTTYASSTE 240
NIAKLLKGWV KTSRKTQNSA DQRIHPDSET KEVIKSDDVE IDCAEAFQAF SGFDHSKDCG 300
SPDHETKPDI NGCSNQSQLY LFEKWLFEDS GGQIGDILLD ENSNFF
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds specifically to the DNA sequence 5'-AACAAAC-3' (PubMed:19170933). Acts as a positive regulator of hypersensitive cell death (PubMed:10571865, PubMed:12119395). Acts as a positive regulator of salicylic acid synthesis (PubMed:16730712). Regulates very-long-chain fatty acid biosynthesis (PubMed:18326828). Acts cooperatively with BZR2 to promote expression of a subset of brassinosteroids target genes (PubMed:19170933). Transcriptional activity and hypersensitive response control negatively regulated by PLA2-ALPHA and by the Xanthomonas type III effector XopD (AC G9L9K6) (PubMed:20696912, PubMed:21917550). Involved in the regulation of abscisic acid (ABA) signaling (PubMed:22814374). Increased levels of MYB30 can accelerate flowering both in long and short days through the regulation of FT (PubMed:24587042). {ECO:0000269|PubMed:10571865, ECO:0000269|PubMed:12119395, ECO:0000269|PubMed:16730712, ECO:0000269|PubMed:18326828, ECO:0000269|PubMed:19170933, ECO:0000269|PubMed:20696912, ECO:0000269|PubMed:21917550, ECO:0000269|PubMed:22814374, ECO:0000269|PubMed:24587042}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated during hypersensitive response, but no expression detected during compatible interaction with pathogens (PubMed:10571865). Specifically induced in the inoculated zone 4 hours post pathogen infection (PubMed:20696912). Up-regulated by jasmonic acid and salicylic acid (PubMed:16463103, PubMed:16730712). Transcriptionally regulated by BZR2 (PubMed:19170933). {ECO:0000269|PubMed:10571865, ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16730712, ECO:0000269|PubMed:19170933, ECO:0000269|PubMed:20696912}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC155348 | 0.0 | AC155348.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' chromosome Cytogenetic chromosome 1 clone KBrH097M21, complete sequence. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Kaurilind E,Xu E,Brosché M
A genetic framework for H2O2 induced cell death in Arabidopsis thaliana.
BMC Genomics, 2015. 16: p. 837
[PMID:26493993] - Lee HG,Seo PJ
The Arabidopsis MIEL1 E3 ligase negatively regulates ABA signalling by promoting protein turnover of MYB96.
Nat Commun, 2016. 7: p. 12525
[PMID:27615387] - Serrano I, et al.
A non canonical subtilase attenuates the transcriptional activation of defence responses in Arabidopsis thaliana.
Elife, 2017.
[PMID:27685353] - Liao C,Zheng Y,Guo Y
MYB30 transcription factor regulates oxidative and heat stress responses through ANNEXIN-mediated cytosolic calcium signaling in Arabidopsis.
New Phytol., 2017. 216(1): p. 163-177
[PMID:28726305] - Lee HG,Kim J,Suh MC,Seo PJ
The MIEL1 E3 Ubiquitin Ligase Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Stems.
Plant Cell Physiol., 2017. 58(7): p. 1249-1259
[PMID:28838126] - Mabuchi K, et al.
MYB30 links ROS signaling, root cell elongation, and plant immune responses.
Proc. Natl. Acad. Sci. U.S.A., 2018. 115(20): p. E4710-E4719
[PMID:29712840] - Zheng Y,Chen Z,Ma L,Liao C
The Ubiquitin E3 Ligase RHA2b Promotes Degradation of MYB30 in Abscisic Acid Signaling.
Plant Physiol., 2018. 178(1): p. 428-440
[PMID:30030326]
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