 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC131_p10 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 217aa MW: 25241.3 Da PI: 5.4872 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC131_p10 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 63.5 | 3e-20 | 57 | 110 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
++++t+eq++ Le F ++++ e++ +LA++lgL+ rqV vWFqNrRa++k+
RrC131_p10 57 KRKLTDEQVNMLEMSFGDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKN 110
4589************************************************95 PP
|
| 2 | HD-ZIP_I/II | 122.4 | 2.2e-39 | 56 | 146 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
+kr+l++eqv++LE+sF e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y +Lk+++d+++ +++rLe+e +L+e+l
RrC131_p10 56 RKRKLTDEQVNMLEMSFGDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYIKLKNSHDSVVVDKCRLESELLQLKEQLY 146
8***************************************************************************************997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009733 | Biological Process | response to auxin |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 217 aa
Download sequence Send
to blast |
MNHTVDDQNM AFISQLYPDV YTRMVPQQGE VKPPRRRRKK SKAPAAAGDG SNCLFRKRKL 60
TDEQVNMLEM SFGDEHKLES ERKDKLAAEL GLDPRQVAVW FQNRRARWKN KRLEEEYIKL 120
KNSHDSVVVD KCRLESELLQ LKEQLYDAER EIQRLAERVE RGSSNSPVSS SVSVEANETP 180
FFGDYKVGDD GDDYNNLFYP VPENIYTDGA EWMNLYI
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 37 | 58 | RKKSKAPAAAGDGSNCLFRKRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189549 | 1e-117 | AC189549.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005C21, complete sequence. |
