PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

RrC1312_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 108aa MW: 12274.8 Da PI: 4.4037

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1312_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	31.4	5.4e-10	55	106	1	48
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikev.diykvePwdLp 48 lp+G++F+Ptdee++ e+L++k+ + + ++e+i +v di++++P++Lp RrC1312_p1 55 LPKGVKFEPTDEEVI-EHLQAKCGIDGlkpnHFIQEFIFSVeDINYIHPENLP 106 799**********.9987777445433334555556********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-10	42	107	IPR003441	NAC domain
PROSITE profile	PS51005	13.133	55	108	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
MDRTWIVDGP WIVENVKNVS MSSDLQIEDC GAYINCPNCG HRNDNRNVLT PWPGLPKGVK 60 FEPTDEEVIE HLQAKCGIDG LKPNHFIQEF IFSVEDINYI HPENLPGN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL163792	2e-35	AL163792.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T15N1 (ESSA project).
GenBank	AL163817	2e-35	AL163817.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project).
GenBank	CP002688	2e-35	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018473718.1	2e-75	PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 8-like
TrEMBL	A0A0D3B149	5e-63	A0A0D3B149_BRAOL; Uncharacterized protein
TrEMBL	A0A397ZVL2	7e-63	A0A397ZVL2_BRACM; Uncharacterized protein
STRING	Bra006257.1-P	4e-62	(Brassica rapa)
STRING	Bo3g009820.1	8e-64	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23562	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14490.1	9e-58	NAC domain containing protein 85