PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC13082_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 307aa    MW: 33971.9 Da    PI: 4.2702
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC13082_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.33.5e-121453140
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                 k+ie+ks + vtfskRr+g+  KA  L+v+ +a++a++  
  RrC13082_p1 14 KKIEDKSSKAVTFSKRREGLYSKAAQLCVMGEAQIAILAT 53
                 68**********************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-10666IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.858657IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-14780IPR002100Transcription factor, MADS-box
CDDcd002666.42E-20785No hitNo description
PRINTSPR004041.5E-7828IPR002100Transcription factor, MADS-box
PfamPF003192.2E-111556IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-72843IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MVKRGGTKRK AVLKKIEDKS SKAVTFSKRR EGLYSKAAQL CVMGEAQIAI LATPSSSNSN  60
VPFFSFGHSS VDSLVSAYLS GQRPVRVPEE SKKMREDIGI CMARKELGLG NWWEKEELAT  120
SKSLEEIMQA MESMEILIRD ADRLLGEDAF GFSQRKGEKK KDDSDDVVLQ HHQGTGKTLI  180
DVDDDLLPQA LITSEDDQII SICDSFFNDK DKNAALSATH SEVNSEEWSD MDFEQLLNGF  240
EEEEKDDDDH QIEAVSENSC SNKNNNALLL PGDDQNLLDL DLANVDLDTI FGGLASLDAE  300
LVASLLM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448806.11e-180PREDICTED: agamous-like MADS-box protein AGL97
RefseqXP_018448809.11e-180PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLA0A3P6FNS51e-112A0A3P6FNS5_BRAOL; Uncharacterized protein
STRINGBo8g011140.11e-109(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.11e-53M-type_MADS family protein