PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC13074_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 179aa    MW: 20277.2 Da    PI: 10.253
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC13074_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.000964769123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C++ Fs+   L  H  +H
  RrC13074_p3 47 FECKTCNRKFSSFQALGGHRASH 69
                 89**********99999998887 PP
2zf-C2H216.52.4e-0594116123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg+sF +   L  H+r+H
  RrC13074_p3  94 HECSICGQSFGTGQALGGHMRRH 116
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.17E-846116No hitNo description
PfamPF139122.1E-114671IPR007087Zinc finger, C2H2
SMARTSM003550.194769IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3254774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
PfamPF139121.8E-1293118IPR007087Zinc finger, C2H2
SMARTSM003550.009794116IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.55494121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MKRERSEFEQ SIKNLDIARC LMILSQTSIV KQVDVNQYTE RNTSNRFECK TCNRKFSSFQ  60
ALGGHRASHK KPKLSVDQRE VKHVTNSYNG THVHECSICG QSFGTGQALG GHMRRHRSST  120
KVEPSQLISP VIPNVPVLKR CSSSKRVLSL DLNLTPLEND LETIFGRTFS PNLDMKFVV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437483.11e-128PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD41e-104ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A0D3BR811e-118A0A0D3BR81_BRAOL; Uncharacterized protein
STRINGBo4g030570.11e-119(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-106C2H2 family protein