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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC13052_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 484aa MW: 53528.1 Da PI: 5.1617 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.7 | 1.5e-11 | 315 | 360 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er RR+++N++f Lr +P+ K++Ka+ L A+ YI++L RrC13052_p1 315 NHVEAERLRREKLNQRFYALRATVPNV-----SKMDKASLLGDAICYINEL 360 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.9E-45 | 28 | 197 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.279 | 311 | 360 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.21E-16 | 314 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.17E-12 | 314 | 361 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.4E-15 | 315 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.5E-9 | 315 | 360 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-13 | 317 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005509 | Molecular Function | calcium ion binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MIDALMSSPS SSFWPPLSPA NPSPDIALQK RLQAVLNGTH EAWTYAIFWT PSYYDYSGES 60 VLKWGDGIYK GEEADKTRRR RPRRTTMISD EALPMVYDEN DVEVSETDTE WFYVVSMAAS 120 FGSETGLPGK AFATYKPVWV TGSDQILGSG CDRAKQGGAS GLRTIVCIPL DNGVLELGST 180 VEIQQNSDLM NKIRVVFSFE GSRDFSGDPS SNSFPLFSTQ LESGGGSSTV TVNANRYPNP 240 VYAQTVNFGT EEALHSPNRS YPGQMQNDDG ELLHAVEDMD GSDHSDIEAA TVARENMQKK 300 KRGRKLANGR KEPLNHVEAE RLRREKLNQR FYALRATVPN VSKMDKASLL GDAICYINEL 360 KLRAENAESE RNAIRIELNK LREEIAGQNA ISSVPRGGQN ASEIETASID VKVFGCDVMV 420 RLESSKTNHP AARLMSAFMD LDVELNHASI SVIHDLMVQQ ATVKMGSRMY TQEQLQAMLV 480 SKIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 1e-40 | 27 | 199 | 8 | 194 | Transcription factor MYC3 |
4rqw_B | 1e-40 | 27 | 199 | 8 | 194 | Transcription factor MYC3 |
4rs9_A | 1e-40 | 27 | 199 | 8 | 194 | Transcription factor MYC3 |
4yz6_A | 1e-40 | 27 | 199 | 8 | 194 | Transcription factor MYC3 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00547 | DAP | Transfer from AT5G46830 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018455076.1 | 0.0 | PREDICTED: transcription factor bHLH28-like | ||||
Swissprot | Q9LUK7 | 1e-162 | BH028_ARATH; Transcription factor bHLH28 | ||||
TrEMBL | A0A3P6EGM8 | 0.0 | A0A3P6EGM8_BRAOL; Uncharacterized protein | ||||
STRING | Bo01130s010.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13953 | 16 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46830.1 | 1e-156 | NACL-inducible gene 1 |
Publications ? help Back to Top | |||
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