PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1304_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRF
Protein Properties Length: 380aa    MW: 43229.2 Da    PI: 8.0238
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1304_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.21.6e-2481125145
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                 d+epgrCrRtDGKkWRCsr++++++k+CE+H+hrgr+r +ks ++
  RrC1304_p3  81 DPEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRGRNRAKKSIDQ 125
                 79***************************************9886 PP
2QLQ64.23.2e-221651237
         QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                +FT++Q+q+L++Q+l+yKy+++++PvPpeL++ i++
  RrC1304_p3 16 PFTPTQWQELEHQALIYKYMVSGVPVPPELIFSIRR 51
                9*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.9E-141551IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.9271651IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.3E-161650IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.99881125IPR014977WRC domain
PfamPF088791.0E-2082122IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MTSLSGSSGR TTERPPFTPT QWQELEHQAL IYKYMVSGVP VPPELIFSIR RSLDSSLVPR  60
LLPHQPLGWG CYQMGFGRKQ DPEPGRCRRT DGKKWRCSRE AYPDSKYCEK HMHRGRNRAK  120
KSIDQSQTTA PLISPSLSFP SNHNNPSPTL SSSSTTYSAS SSSSSPLLDT YSNINRFGGG  180
SSNSRGYFNN DYPYPSTSPK QQQQQTLHHA SASSLYQNTS TPQLNVLASA TDHKDIRYFQ  240
GTGERVGIGE RTFFPEASRS FQDSPYHHQQ PLATLMNDPY HHKFDHHDNT YSSSSQHHHR  300
DQDHRQQQQC FVLGADMFNK PTRPVSENTS RQDLDNQEDE EKDSSETKKS LHHFFGEEWA  360
QNKNSSDSWL DLSSHSRLDT
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1026380.0AY102638.1 Arabidopsis thaliana transcription activator (GRF5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438301.10.0PREDICTED: growth-regulating factor 5-like isoform X2
SwissprotQ8L8A61e-178GRF5_ARATH; Growth-regulating factor 5
TrEMBLA0A397ZL320.0A0A397ZL32_BRACM; Uncharacterized protein
TrEMBLA0A3P5YXY40.0A0A3P5YXY4_BRACM; Uncharacterized protein
STRINGXP_006297825.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45672651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-82growth-regulating factor 5