PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1301_p5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 376aa    MW: 43186.4 Da    PI: 6.4192
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1301_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.52.3e-3551243127
         NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 
                 +GfrF Ptdee+v++yL+ k  g +  +++++i++vdi+++ePw+Lp k k +++++ wy+F ++++   +g+r+nr+tksg+Wk+tg ++++++k  +
  RrC1301_p5   5 VGFRFIPTDEEIVDYYLRLKNLGGDtSHVDKAISTVDICSFEPWELPsKsKRESRDQMWYYFGRKEN---RGERQNRKTKSGFWKKTGVTTNIMRKrgN 100
                 7*****************99877773666677***************433445577799*9998766...689**********************9877 PP

         NAM  97 gelvglkktLvfykgrapkgektdWvmheyr 127
                 +e++g k++Lvf        +k++Wvmhey 
  RrC1301_p5 101 REKIGEKRVLVFQ-------SKSEWVMHEYV 124
                 888*********8.......5899******7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.813143IPR003441NAC domain
SuperFamilySSF1019413.4E-374143IPR003441NAC domain
PfamPF023658.7E-225124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MENRVGFRFI PTDEEIVDYY LRLKNLGGDT SHVDKAISTV DICSFEPWEL PSKSKRESRD  60
QMWYYFGRKE NRGERQNRKT KSGFWKKTGV TTNIMRKRGN REKIGEKRVL VFQSKSEWVM  120
HEYVATFLPP TQTTYTVCKV IFKGDPRDLP SSAPGGGAVI EKLTTTSFNP RHFTGLLDAE  180
EETQIDDALR RAFDNVSTHD LNSLLNNENS DEEEEHRNLL FMQEDRNDYR PKMSLTGFIS  240
DDDSDSDLIS ATTTTTTTTT FPPHNANVLF TMIVFHPNLE PFSNRRIDQI TDLQNAPNST  300
TKLMSPTQVV SKTLETSLDT SEKKKNLYED VQGTEMGESE MDQYIINNKR AGFYYRKIQS  360
CIKKTLLCSS IPPRTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-18612320140NO APICAL MERISTEM PROTEIN
1ut4_B1e-18612320140NO APICAL MERISTEM PROTEIN
1ut7_A1e-18612320140NO APICAL MERISTEM PROTEIN
1ut7_B1e-18612320140NO APICAL MERISTEM PROTEIN
3swm_A1e-18612323143NAC domain-containing protein 19
3swm_B1e-18612323143NAC domain-containing protein 19
3swm_C1e-18612323143NAC domain-containing protein 19
3swm_D1e-18612323143NAC domain-containing protein 19
3swp_A1e-18612323143NAC domain-containing protein 19
3swp_B1e-18612323143NAC domain-containing protein 19
3swp_C1e-18612323143NAC domain-containing protein 19
3swp_D1e-18612323143NAC domain-containing protein 19
4dul_A1e-18612320140NAC domain-containing protein 19
4dul_B1e-18612320140NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00123DAPTransfer from AT1G02250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018492222.10.0PREDICTED: NAC domain-containing protein 5-like
SwissprotO819141e-105NAC5_ARATH; NAC domain-containing protein 5
TrEMBLM4EWW31e-179M4EWW3_BRARP; Uncharacterized protein
STRINGBra033298.1-P1e-180(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.11e-92NAC domain containing protein 5
Publications ? help Back to Top
  1. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]