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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC1301_p3 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
NAC |
Protein Properties |
Length: 425aa MW: 48945.3 Da PI: 5.6037 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC1301_p3 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 105.5 | 6.6e-33 | 4 | 135 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95
pGf+F+P deelv +yL++k+ g+ ++ vike++i++++PwdL+ +k+k+++ wyf s+r+++ g+r++r t sg+Wk tg +v ++
RrC1301_p3 4 KPGFEFRPYDEELVGYYLRHKILGNYSLVDGVIKEIKICSFDPWDLRfqSKIKSRDLVWYFLSRREEN--VGSRQSRRTPSGFWKLTGDPVDVNDRwgh 100
59************************999899**************8423777777799999988776..589**********************9776 PP
NAM 96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128
+ ++g k++L+f kg++++ +k+dWvmhe +
RrC1301_p3 101 lsgFRGKIGYKRVLTFGKGKSSS-SKSDWVMHELHY 135
6664456**********998887.8********875 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 425 aa
Download sequence Send
to blast |
MGEKPGFEFR PYDEELVGYY LRHKILGNYS LVDGVIKEIK ICSFDPWDLR FQSKIKSRDL 60 VWYFLSRREE NVGSRQSRRT PSGFWKLTGD PVDVNDRWGH LSGFRGKIGY KRVLTFGKGK 120 SSSSKSDWVM HELHYTLLPE HKRTYVICRL EYKGDDMNIL SANPTYPIPT FAPTMANSAS 180 SVVDQSSNGN SGYYNTLSEY DSAYQGHQFN GNYDAQPSFQ GYTEYLNSTS EYDLANGSHW 240 FSNLQQQAPY SAPYQDDSDL WKQVVEENWT SLVDERTYMR EDSSHYRPKD PVTGIFPDDS 300 SDDDTDSTIG RDTWSSTDSV GSKDVPYHTP KDDTPSLSTV EPLHNHEAQE QPKHLELQLQ 360 GKEKKSECEW KMAEDSTKKV PSTTAVKQSW IVLEEMSQRN SRWIHLKNMI IGFLLFLSII 420 GWIIL
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC007323 | 6e-36 | AC007323.5 Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I, complete sequence. |
GenBank | AF196566 | 6e-36 | AF196566.1 Arabidopsis thaliana chromosome I, partial sequence. |
GenBank | CP002684 | 6e-36 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |