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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC12869_p1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
WRKY |
Protein Properties |
Length: 431aa MW: 47720.4 Da PI: 5.6178 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC12869_p1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 96.7 | 1.6e-30 | 262 | 319 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
dDg++WrKYGqK+vkg++++rsYY+Ct++ C+vkk+ver aed k++ itY g H+h+
RrC12869_p1 262 DDGFRWRKYGQKVVKGNPNARSYYKCTYSACNVKKHVERGAEDVKFLLITYDGIHEHD 319
8********************************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009960 | Biological Process | endosperm development |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 431 aa
Download sequence Send
to blast |
MNAFDGNNIG MTTCWASPSS PSPRTLLAML NQADNNGHVV DQISEIFPQT NQQSEQRSGL 60 RERVSARIEF NLPPLEIQNN RPFAALFRNP SPTVPSPLLL ISPGFSPSAM LQFPNRFFDP 120 THRILPSPVA NGGPPEAVES SGADHAMMKV SNNDPMHVAL PPQQASIYIP SHVDSIDAPI 180 DASFESGPAV NETDVINMEI ERENKDDEEY MEDDHNIVDE LDAEPSSPKR SKFGGATMIG 240 ATRSCKSQRV IIQVETEENN PDDGFRWRKY GQKVVKGNPN ARSYYKCTYS ACNVKKHVER 300 GAEDVKFLLI TYDGIHEHDP PAARGSSSSG LKSRYGSSVS QDYNNHQTVR LGRPPSSSQA 360 MRLFPSSLDP PMDMTQFYMT GLAKLPSLPV NQNHGLMNRN EEPKIDRVIP DGTEVFKGIR 420 DRLNLNFGLS L
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates seed size by negatively regulating the cellularization of syncytial endosperm (PubMed:16293693). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:16293693}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KM593151 | 0.0 | KM593151.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY65) mRNA, complete cds. |
Publications
? help Back to Top |
- Li J,Nie X,Tan JL,Berger F
Integration of epigenetic and genetic controls of seed size by cytokinin in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2013. 110(38): p. 15479-84 [PMID:24003120] - Fatihi A,Zbierzak AM,Dörmann P
Alterations in seed development gene expression affect size and oil content of Arabidopsis seeds. Plant Physiol., 2013. 163(2): p. 973-85 [PMID:24014578] - Liu P, et al.
Arabidopsis RAN1 mediates seed development through its parental ratio by affecting the onset of endosperm cellularization. Mol Plant, 2014. 7(8): p. 1316-1328 [PMID:24719465] - Xiao YG,Sun QB,Kang XJ,Chen CB,Ni M
SHORT HYPOCOTYL UNDER BLUE1 or HAIKU2 mixepression alters canola and Arabidopsis seed development. New Phytol., 2016. 209(2): p. 636-49 [PMID:26389843] - Meng LS,Wang YB,Loake GJ,Jiang JH
Seed Embryo Development Is Regulated via an AN3-MINI3 Gene Cascade. Front Plant Sci, 2016. 7: p. 1645 [PMID:27857719] - Meng LS,Wang YB,Loake GJ,Jiang JH
Corrigendum: Seed Embryo Development Is Regulated via an AN3-MINI3 Gene Cascade. Front Plant Sci, 2017. 8: p. 1073 [PMID:28616014]
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