PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12830_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 79aa    MW: 9043.4 Da    PI: 7.2574
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12830_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.51.5e-174479843
                 HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
       SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                 nrqvtf+kRrng++ KA  LS+LC+  vav+++sst
  RrC12830_p1 44 NRQVTFCKRRNGLMEKARQLSILCGSSVAVLMVSST 79
                 9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR004043.1E-93151IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-63479IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-144379IPR002100Transcription factor, MADS-box
PfamPF003192.4E-164478IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.2554479IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-95166IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-96679IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MFQELRDSGG DDLDSSFHWY QFRFLDVLLG FEIGSRDSLV MVFNRQVTFC KRRNGLMEKA  60
RQLSILCGSS VAVLMVSST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2890823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65080.12e-17MIKC_MADS family protein