PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC126_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 663aa    MW: 71985.2 Da    PI: 7.1586
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC126_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like537.8e-17124176255
    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 ++ Wt+ L ++F +a+e + G +k tP +il+ m+++ Lt++hv+S LQkYR 
  RrC126_p2 124 SQITWTSSLENQFCKAIEYI-GVHKVTPTKILKYMNLNYLTRTHVASKLQKYRK 176
                6799****************.9*******************************5 PP
2Response_reg48.25.9e-1728428108
                   EESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHH CS
  Response_reg  28 eaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelv 108
                   +a d++eal +l  + +++D++++D  +pg++G++l k+i+    +lp+iv++a  ++e  +e l+ Ga+ f  Kp++p++l 
     RrC126_p2   2 TANDSSEALSTLrgQCNNIDVVITDYHIPGLNGVQLKKRINDDFGNLPVIVISADMNNEIEQETLSSGAMCFMKKPIKPNDLD 84 
                   688999999999444455**********************99999***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011024.539191IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.71E-17295IPR011006CheY-like superfamily
PfamPF000724.7E-14285IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23007.0E-182108No hitNo description
CDDcd001562.70E-14283No hitNo description
SuperFamilySSF466897.35E-13121180IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-18121180IPR009057Homeodomain-like
TIGRFAMsTIGR015576.3E-16123176IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MTANDSSEAL STLRGQCNNI DVVITDYHIP GLNGVQLKKR INDDFGNLPV IVISADMNNE  60
IEQETLSSGA MCFMKKPIKP NDLDTICKHA LNYKINGGSK EIQKTNSTSN PDDGSSRPKA  120
KRKSQITWTS SLENQFCKAI EYIGVHKVTP TKILKYMNLN YLTRTHVASK LQKYRKLLKK  180
AKDENEEKTR RAMISNIRSS SYSNPQRSYN YKTSLSNNNL FNSRRGYGLG QSSRMMNNNA  240
GFHGSVNYMN RRPTYNSQTG SNFLPRRGSH GVSNGMFAVK EELGSMSGTS QESQAQKFGQ  300
YGTTSGVLGM NSNLNTGTTG INYAGIRIDE KGDVFGPGGL RVYANENASL GGMRVTSNGN  360
GSVGGIRVHA TSNGSFVGTR VQGDSNGFLD KIKVHGTGNG SLGGTRVQGN DNGFLNEIIV  420
HGTGNGSFGE IRVHGNDSFG GLRVNSTDNG NGSLDGVTVH GNSNVNGSLG GMKVHGTGNG  480
SLGGMQVHGN ASLGENLSGM NWNSNNNNMM MSNHGSSTSR FPSALSSFFD DKDQSHNYLK  540
AQTSGVVPVL ENPIISNNHH GINEFYRDTI NSEFDHNQQQ GNATGENPEV PTAYPLENLS  600
NGNYNEETLN TVAANSEMYF PTDQNMNITN QEYGAEDLIL PLSFDQDCDD ENSLKFLLED  660
DMN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488143.10.0PREDICTED: hornerin-like
TrEMBLA0A3P6AT360.0A0A3P6AT36_BRAOL; Uncharacterized protein
STRINGBo3g108010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1654279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.18e-44response regulator 21