PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12681_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 164aa    MW: 18971.8 Da    PI: 6.5073
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12681_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.4e-0875104130
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPka 30 
                  ++++h e+Er+RR+++ s f +Lr +lP++
  RrC12681_p1  75 KKAKHREIERQRRQEVTSLFKNLRYILPSQ 104
                  6899************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.61E-472107No hitNo description
SuperFamilySSF474599.6E-773112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.64574124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-575105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-675104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MDFTSSSLFT ADFALENELD LSSLITPSTF IPFQEPTPST PIIHCAGAEN DGRQRIRETT  60
ITDEITNEDV EPKNKKAKHR EIERQRRQEV TSLFKNLRYI LPSQYIKLLV QQQCLDVVSC  120
ISSRLHPRFI HTIVCKVENG IEVNFLELQE KMIKMAKLCS YGYY
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439496.17e-72PREDICTED: transcription factor bHLH55-like
SwissprotQ9LN957e-44BH055_ARATH; Transcription factor bHLH55
TrEMBLA0A0D3DXR16e-63A0A0D3DXR1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FLS06e-60A0A3P6FLS0_BRAOL; Uncharacterized protein (Fragment)
STRINGBo8g108110.11e-63(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.16e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Wisman E, et al.
    Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes.
    Proc. Natl. Acad. Sci. U.S.A., 1998. 95(21): p. 12432-7
    [PMID:9770503]