PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1259_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 236aa    MW: 27049.6 Da    PI: 5.2036
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1259_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.8e-115699654
                HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 + Er+RR+++N+++  Lr+++P+ +      Kl+Ka+i +  ++Y+++L
  RrC1259_p1 56 VASERKRREKLNQRLLALRSVVPNiS------KLDKASIIRDSIKYMQEL 99
                578*********************66......***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.245099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-115399No hitNo description
SuperFamilySSF474594.06E-1753121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-95599IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-1356105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-1656118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEDLDDEYKN YWETTMFFQN QELEFDSWPL EDTFSGSGES SSPDGAATSP VTSKNVASER  60
KRREKLNQRL LALRSVVPNI SKLDKASIIR DSIKYMQELI DQEKKLEAEI RELESRSMFL  120
NNPTRDYDCI NNFPGNQQQD LSGINIMRSK KSRQMDCNTF GSSVTRVPNH SPIEVLEMTV  180
TCMGEKTVVV CITCSKKRET MLQLCKVLES LNLNILTTNF SSFSSHLSTT LFLQQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-1355109963Transcription factor MYC2
5gnj_B2e-1355109963Transcription factor MYC2
5gnj_E2e-1355109963Transcription factor MYC2
5gnj_F2e-1355109963Transcription factor MYC2
5gnj_G2e-1355109963Transcription factor MYC2
5gnj_I2e-1355109963Transcription factor MYC2
5gnj_M2e-1355109963Transcription factor MYC2
5gnj_N2e-1355109963Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15863ERKRRE
25964RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304821e-97AJ630482.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At4g29930.
GenBankAK1177301e-97AK117730.1 Arabidopsis thaliana At4g29930 mRNA for putative bHLH transcription factor (bHLH027), complete cds, clone: RAFL17-41-A21.
GenBankAK1762011e-97AK176201.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL23-07-N06.
GenBankAK1762761e-97AK176276.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL23-19-M11.
GenBankAK1766741e-97AK176674.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL25-21-A13.
GenBankAK2222121e-97AK222212.1 Arabidopsis thaliana mRNA for bHLH transcription factor - like protein, complete cds, clone: RAFL25-21-A14.
GenBankAK2282011e-97AK228201.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL14-65-D05.
GenBankBT0058691e-97BT005869.1 Arabidopsis thaliana At4g29930 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472031.11e-164PREDICTED: transcription factor bHLH27-like isoform X2
SwissprotQ700E31e-128BH027_ARATH; Transcription factor bHLH27
TrEMBLA0A078I0D41e-159A0A078I0D4_BRANA; BnaA01g07020D protein
STRINGBra011152.1-P1e-159(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128411829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.11e-119bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]