PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12547_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 295aa    MW: 32728.1 Da    PI: 4.9476
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12547_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.0001288110123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+k Fs+   L  H++ H
  RrC12547_p1  88 YTCQFCSKGFSTTQALGGHQNAH 110
                  9*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.38E-784116No hitNo description
Gene3DG3DSA:3.30.160.603.2E-486114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.69788115IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MENQVMSSVT SSASSSSPQP ENSKDMTVPV EEESNEKATE NNNNPNLESS QDAMSETRGE  60
NPSLGSGAVR TGTTEMTMLY PSRSNKIYTC QFCSKGFSTT QALGGHQNAH KQDREWEKRR  120
KEMEEDFPGL SYLNRYIDKP HLLLGGYSED ALSNENHLGI TLEPFKRRGP GGMNMTVAPR  180
ITPTRFFTGN TFTGGSSSRG LGPRPTYAPP MFPRNVPPFL PHHPPYLPHP PFLPHPPRTT  240
NLPSYLYPQE NRLSEEDLTL TIGSNTKVVV IDDDDDDDQP GEDGNPKNWG NDLSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479319.11e-163PREDICTED: zinc finger protein STAMENLESS 1-like
TrEMBLA0A397Z8V71e-119A0A397Z8V7_BRACM; Uncharacterized protein
TrEMBLM4D0D91e-119M4D0D9_BRARP; Uncharacterized protein
STRINGBra009937.1-P1e-120(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63631842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.18e-58C2H2 family protein