PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 210aa MW: 24150.2 Da PI: 9.1864

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC12495_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.6e-06	97	119	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H RrC12495_p1 97 FVCEICNKGFQRDQNLQLHRRGH 119 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.4E-6	96	119	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.29E-7	96	119	No hit	No description
PROSITE profile	PS50157	10.949	97	119	IPR007087	Zinc finger, C2H2
Pfam	PF12171	2.6E-5	97	119	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	97	119	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	99	119	IPR007087	Zinc finger, C2H2
SMART	SM00355	120	139	169	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.0E-4	162	195	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.29E-7	169	194	No hit	No description
SMART	SM00355	180	174	194	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MMNEDILLHQ QVHQQHEENM SNLTSASGDQ ASVSSGNRTE VSGSNYFPHH HQQEEQQQFI 60 APESQPQKKR RNQPGNPDPE SEVIALSPKT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN 120 LPWKLKQRPN KEVIRKKVYV CPEASCVHHD PSRALGDLTG IKKHFFRKHG EKKWKCDKCS 180 KKYAVQSDCK AHSKTCGTKE YRCDCGTIFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-19	170	210	3	43	Zinc finger protein JACKDAW
5b3h_F	4e-19	170	210	3	43	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	136	KLKQRPNKEVIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF361797	0.0	AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
GenBank	AY091693	0.0	AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013646412.1	1e-141	protein indeterminate-domain 11-like isoform X2
Refseq	XP_022550964.1	1e-141	protein indeterminate-domain 11-like isoform X1
Refseq	XP_022550965.1	1e-141	protein indeterminate-domain 11-like isoform X1
Swissprot	Q9LRW7	1e-129	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	A0A3P6FI34	1e-140	A0A3P6FI34_BRAOL; Uncharacterized protein
STRING	Bo1g134920.1	1e-139	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	1e-117	indeterminate(ID)-domain 11

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]