PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC12484_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 287aa MW: 32537.8 Da PI: 4.8229

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC12484_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	128	7.6e-40	6	136	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 +GfrF Ptdeel++++Lk+k++gk+ +++ i+ev i+ +eP +Lp +++k+++ wyf s+++ ++++++ ++r+t sg+Wk tg+d++v+++ RrC12484_p1 6 VGFRFCPTDEELINYFLKNKIQGKSWLVDDKIREVSICGHEPASLPslSMIKSKDPVWYFISPKEYTSPKKNVTKRTTPSGFWKVTGNDRKVKEEkrr 103 7**********************999999***********6448888889*********************************98666 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g ++g+kktLv+++g++ ++ +t W+mhey++ RrC12484_p1 104 NGVVIGIKKTLVYHEGNSANAARTPWTMHEYHI 136 7777*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	43.092	4	154	IPR003441	NAC domain
SuperFamily	SSF101941	5.62E-46	5	154	IPR003441	NAC domain
Pfam	PF02365	3.7E-24	6	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MATSLVGFRF CPTDEELINY FLKNKIQGKS WLVDDKIREV SICGHEPASL PSLSMIKSKD 60 PVWYFISPKE YTSPKKNVTK RTTPSGFWKV TGNDRKVKEE KRRNGVVIGI KKTLVYHEGN 120 SANAARTPWT MHEYHITCLP FVNQSYVICK IFYKGNVEDI PSCSNSSEPS QYLLINDSNT 180 VRATNKPPQV EQAGQESLSG FSANDVIMLM NEQEDLCPWD ALCPIPNTLF IDNNDNTNVQ 240 LQAPCLAQDD DENLGAFTQI EYLCTDHQEF ITQENSEEYM INGLCLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-22	7	154	20	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-22	7	154	20	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-22	7	154	20	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-22	7	154	20	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-22	7	154	23	168	NAC domain-containing protein 19
3swm_B	1e-22	7	154	23	168	NAC domain-containing protein 19
3swm_C	1e-22	7	154	23	168	NAC domain-containing protein 19
3swm_D	1e-22	7	154	23	168	NAC domain-containing protein 19
3swp_A	1e-22	7	154	23	168	NAC domain-containing protein 19
3swp_B	1e-22	7	154	23	168	NAC domain-containing protein 19
3swp_C	1e-22	7	154	23	168	NAC domain-containing protein 19
3swp_D	1e-22	7	154	23	168	NAC domain-containing protein 19
4dul_A	1e-22	7	154	20	165	NAC domain-containing protein 19
4dul_B	1e-22	7	154	20	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269\|PubMed:21450938}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269\|PubMed:21450938}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013722780.1	1e-157	NAC domain-containing protein 69-like
Swissprot	Q9M126	5e-95	NAC69_ARATH; NAC domain-containing protein 69
TrEMBL	A0A0D3DZV0	1e-175	A0A0D3DZV0_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6D984	1e-175	A0A3P6D984_BRAOL; Uncharacterized protein
STRING	Bo9g004070.1	1e-176	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1982	19	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01550.1	2e-97	NAC domain containing protein 69

Publications ? help Back to Top
Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] He L, et al. Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance. Plant Mol. Biol., 2017. 93(4-5): p. 369-387 [PMID:27975189]