PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12371_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 459aa    MW: 52157.4 Da    PI: 7.3044
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12371_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.7e-2061116156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  r++ +++tk+q++e+e++F+++++p+ ++r++L+++lgL+  q+k+WFqN+R++ k
  RrC12371_p1  61 RKRYHRHTKHQIQEMENFFKECPHPDDAQRKDLSRQLGLDHHQIKFWFQNKRTQIK 116
                  789999**********************************************9988 PP
2START1035e-332454222164
                  HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
        START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                  la  a++el+++a ++ep+W   +      +n  e++++f  ++v        ++ea++a+ +v+m++ + v++l+d++  W++++a    + + ++ 
  RrC12371_p1 245 LAVVAMEELIAMARLDEPLWNIRAngtsLALNLNEYTRTF--GNVvgpilngLRTEASKATSIVFMNHLDIVQSLMDVN-LWSNMFArmvaRSMSHDL 339
                  66779*****************999988789999999999..666789*******************************.*******77774444444 PP

                  ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
        START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
                  i +       g+ +lm+ae+q+lsp+v+ R+ +fvRy++q g+g w++vdvS+++  +  e     +++++pSg+li++++ng skv
  RrC12371_p1 340 ILTEvqgnfdGVFHLMTAEYQVLSPVVStRECYFVRYSKQRGDGIWAVVDVSIEHLFPHLE----LKCRRRPSGCLIQQLENGLSKV 422
                  44447779***********************************************999887....99999****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-2239116IPR009057Homeodomain-like
SuperFamilySSF466891.42E-1947119IPR009057Homeodomain-like
PROSITE profilePS5007116.45558118IPR001356Homeobox domain
SMARTSM003891.8E-1859122IPR001356Homeobox domain
CDDcd000865.25E-1861119No hitNo description
PfamPF000469.8E-1861116IPR001356Homeobox domain
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PROSITE profilePS5084824.897235422IPR002913START domain
CDDcd088753.29E-72239422No hitNo description
SuperFamilySSF559611.33E-19242423No hitNo description
SMARTSM002341.2E-12244454IPR002913START domain
PfamPF018521.6E-25245422IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MSQPNMVPVE MNNNVGDNTT TTNNIMNGGI VFGDGEFDSA NTSENQEDGS DHQDPARPSK  60
RKRYHRHTKH QIQEMENFFK ECPHPDDAQR KDLSRQLGLD HHQIKFWFQN KRTQIKNHQE  120
RHENLQLRAE NDRLKAEHHQ CRASIPNARC HKCGGKTAIG EMFIEEHQLR LENARLAEEI  180
RQLSLVVAKR TGKPVMNYTS TTPPIPARPF EGIASNRREA YGSIGNLPGS ALRVRDVDKP  240
LIKELAVVAM EELIAMARLD EPLWNIRANG TSLALNLNEY TRTFGNVVGP ILNGLRTEAS  300
KATSIVFMNH LDIVQSLMDV NLWSNMFARM VARSMSHDLI LTEVQGNFDG VFHLMTAEYQ  360
VLSPVVSTRE CYFVRYSKQR GDGIWAVVDV SIEHLFPHLE LKCRRRPSGC LIQQLENGLS  420
KVLLDSLDFV FNCLVMVLCS HAVSVLSFGL FGWDIFKTD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484754.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_018484755.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_018484757.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_018484758.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_018484759.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_018484760.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_018484761.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_018484762.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_018484763.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_018484764.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_018484765.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_018484766.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_018484767.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_018484768.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
SwissprotQ94C371e-145HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A3N6T9M40.0A0A3N6T9M4_BRACR; Uncharacterized protein
STRINGBo4g177910.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.41e-144homeodomain GLABROUS 2