PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1223_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 420aa    MW: 45024 Da    PI: 6.5934
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1223_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-08265309554
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 h+++Er RR+ri +++  L+el+P+ +      K + a++  + v+Y+k L
  RrC1223_p2 265 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 309
                 99***********************55......9**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR011016.5E-479117IPR005772ATPase, V1 complex, subunit F, eukaryotic
Gene3DG3DSA:3.40.50.105805.2E-359113IPR008218ATPase, V1 complex, subunit F
SuperFamilySSF1594681.11E-151599IPR008218ATPase, V1 complex, subunit F
PfamPF019909.6E-2915116IPR008218ATPase, V1 complex, subunit F
SuperFamilySSF474592.36E-14258319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-14262319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-6265309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-10266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0015991Biological ProcessATP hydrolysis coupled proton transport
GO:0031347Biological Processregulation of defense response
GO:0033180Cellular Componentproton-transporting V-type ATPase, V1 domain
GO:0046961Molecular Functionproton-transporting ATPase activity, rotational mechanism
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MAGRASIPAR NSALIAMIAD EDTVVGFLMA GVGNVDIRRK TNYLIVDSKT TVRQIEDAFK  60
EFSSRDDIAI ILISQYVANM IRFLVDSYNK PVPAILEIPS KDHPYDPAHD SVLSRVNNNN  120
PHGNLSDQTP SDDFFDQILG LPNFSASSSD GGLGGGGAPP MMLQLGSGEE GSHMGGGGLV  180
GGGSGPTGFH NQMFPLGLSL DQGKGHGFLR PEGGGHGSVN RSSSSMKGPV FHGQPMQQPA  240
PAAPHQPTSI RPRVRARRGQ ATDPHSIAER LRRERIAERI RALQELVPTV NKTDRAAMID  300
EIVDYVKFLR LQVKVLSMSR LGGAGAVAPL VTDMPLSSSV EDETSDGGRT PQPAWEKWSN  360
DGTERQVAKL MEENVGAAMQ LLQSKALCMM PISLAMAIYH SQPPDTSSVV KPETNPPPPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3j9t_N3e-3091162112V-type proton ATPase subunit F
3j9u_N3e-3091162112V-type proton ATPase subunit F
3j9v_N3e-3091162112V-type proton ATPase subunit F
4rnd_B3e-3091162112V-type proton ATPase subunit F
4rnd_D3e-3091162112V-type proton ATPase subunit F
5d80_O3e-3091162112V-type proton ATPase subunit F
5vox_N3e-3091162112V-type proton ATPase subunit F
5voy_N3e-3091162112V-type proton ATPase subunit F
5voz_N3e-3091162112V-type proton ATPase subunit F
6o7v_N3e-3091162112V-type proton ATPase subunit F
6o7w_N3e-3091162112V-type proton ATPase subunit F
6o7x_N3e-3091162112V-type proton ATPase subunit F
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269274RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527650.0AK352765.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-G01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473550.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227681e-168UNE12_ARATH; Transcription factor UNE12
TrEMBLM4C9J30.0M4C9J3_BRARP; Uncharacterized protein
STRINGBra000872.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-141bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]