PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12231_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 288aa    MW: 32184.6 Da    PI: 4.0946
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12231_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.12e-121553240
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                 +i nk  r +tf+kRr g+  KA  L+v +da++a++  
  RrC12231_p5 15 KITNKASRATTFTKRRDGLYSKAAQLCVITDAQIAILAT 53
                 699********************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.208657IPR002100Transcription factor, MADS-box
SMARTSM004328.4E-12666IPR002100Transcription factor, MADS-box
CDDcd002663.77E-21783No hitNo description
SuperFamilySSF554551.09E-15780IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-6828IPR002100Transcription factor, MADS-box
PfamPF003191.5E-121556IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-62843IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MVKKGGTKRK PEMTKITNKA SRATTFTKRR DGLYSKAAQL CVITDAQIAI LATPSSSNSN  60
VPFFSFGHSS VESVVSAYLS GQRLAPVSTC DNTKATREDL GICMARKDLG LGFWWDDEKL  120
YYTAVSRNWK IKPYTTTTTI HDEDMVEISP ESDEWSDMDL HKLLQDCDCE EEDQSVSDKT  180
CNNSNSESSA VERSWEEVAM DLDLDTIITY DDLPELPPLV SNSDKEEEED QNVSVKTCNN  240
NNSVSSLPAA AEKSLEEATM ALDFDSIFEG LMSYDDMDLS WSDDLLFM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442004.10.0PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLA0A0D3CP688e-91A0A0D3CP68_BRAOL; Uncharacterized protein
STRINGBo6g013290.11e-91(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.14e-41M-type_MADS family protein