PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12216_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 354aa    MW: 38822.7 Da    PI: 8.5368
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12216_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1707.6e-53171471128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                  lppGfrFhPtdeelvv+yLk+kv++ +l++  +i+ev++yk++Pw+Lp    k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++
  RrC12216_p1  17 LPPGFRFHPTDEELVVHYLKRKVASAPLPV-AIIAEVNLYKFDPWELPGtypKASFGEREWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLAS 113
                  79****************************.88***************53566666999*************************************99 PP

          NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   ++++vg+kk Lvfy+g+ pkg+k+dW+mheyr+
  RrC12216_p1 114 dGKQKVGVKKALVFYSGKPPKGVKSDWIMHEYRI 147
                  67788***************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-6313181IPR003441NAC domain
PROSITE profilePS5100561.83517181IPR003441NAC domain
PfamPF023653.5E-2818147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEGIESSGGP PPPQPNLPPG FRFHPTDEEL VVHYLKRKVA SAPLPVAIIA EVNLYKFDPW  60
ELPGTYPKAS FGEREWYFFS PRDRKYPNGA RPNRAATSGY WKATGTDKPV LASDGKQKVG  120
VKKALVFYSG KPPKGVKSDW IMHEYRIIDN KPNYRPPGCD FANKNSSLRL DDWVLCRIYK  180
KNNASPHVDN NKDQGMIDYI FRKVPPSLSS GLHHNASRSM NIFPGKSSGG YGIFSDGDSG  240
LYDGSSMVCS NGAGSVNINV SNGNPNGLNP ASSSGPMMMM ANMKQALWPV AEEEQDASPS  300
KRFHSVEGGD CLNMSSSVME ETPPLMHQQG GVLGDDGLLR TVSYQLPGLN WYSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-711118511169NO APICAL MERISTEM PROTEIN
1ut4_B2e-711118511169NO APICAL MERISTEM PROTEIN
1ut7_A2e-711118511169NO APICAL MERISTEM PROTEIN
1ut7_B2e-711118511169NO APICAL MERISTEM PROTEIN
3swm_A2e-7131858172NAC domain-containing protein 19
3swm_B2e-7131858172NAC domain-containing protein 19
3swm_C2e-7131858172NAC domain-containing protein 19
3swm_D2e-7131858172NAC domain-containing protein 19
3swp_A2e-7131858172NAC domain-containing protein 19
3swp_B2e-7131858172NAC domain-containing protein 19
3swp_C2e-7131858172NAC domain-containing protein 19
3swp_D2e-7131858172NAC domain-containing protein 19
4dul_A2e-711118511169NAC domain-containing protein 19
4dul_B2e-711118511169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490713.10.0PREDICTED: NAC transcription factor 56-like isoform X1
SwissprotQ9LD440.0NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A3P5ZNP00.0A0A3P5ZNP0_BRACM; Uncharacterized protein
STRINGBo3g066880.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-165NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]