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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC12216_p1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
NAC |
Protein Properties |
Length: 354aa MW: 38822.7 Da PI: 8.5368 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC12216_p1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 170 | 7.6e-53 | 17 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
lppGfrFhPtdeelvv+yLk+kv++ +l++ +i+ev++yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++
RrC12216_p1 17 LPPGFRFHPTDEELVVHYLKRKVASAPLPV-AIIAEVNLYKFDPWELPGtypKASFGEREWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLAS 113
79****************************.88***************53566666999*************************************99 PP
NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
++++vg+kk Lvfy+g+ pkg+k+dW+mheyr+
RrC12216_p1 114 dGKQKVGVKKALVFYSGKPPKGVKSDWIMHEYRI 147
67788***************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MEGIESSGGP PPPQPNLPPG FRFHPTDEEL VVHYLKRKVA SAPLPVAIIA EVNLYKFDPW 60 ELPGTYPKAS FGEREWYFFS PRDRKYPNGA RPNRAATSGY WKATGTDKPV LASDGKQKVG 120 VKKALVFYSG KPPKGVKSDW IMHEYRIIDN KPNYRPPGCD FANKNSSLRL DDWVLCRIYK 180 KNNASPHVDN NKDQGMIDYI FRKVPPSLSS GLHHNASRSM NIFPGKSSGG YGIFSDGDSG 240 LYDGSSMVCS NGAGSVNINV SNGNPNGLNP ASSSGPMMMM ANMKQALWPV AEEEQDASPS 300 KRFHSVEGGD CLNMSSSVME ETPPLMHQQG GVLGDDGLLR TVSYQLPGLN WYSS
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 2e-71 | 11 | 185 | 11 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-71 | 11 | 185 | 11 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-71 | 11 | 185 | 11 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-71 | 11 | 185 | 11 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-71 | 3 | 185 | 8 | 172 | NAC domain-containing protein 19 |
3swm_B | 2e-71 | 3 | 185 | 8 | 172 | NAC domain-containing protein 19 |
3swm_C | 2e-71 | 3 | 185 | 8 | 172 | NAC domain-containing protein 19 |
3swm_D | 2e-71 | 3 | 185 | 8 | 172 | NAC domain-containing protein 19 |
3swp_A | 2e-71 | 3 | 185 | 8 | 172 | NAC domain-containing protein 19 |
3swp_B | 2e-71 | 3 | 185 | 8 | 172 | NAC domain-containing protein 19 |
3swp_C | 2e-71 | 3 | 185 | 8 | 172 | NAC domain-containing protein 19 |
3swp_D | 2e-71 | 3 | 185 | 8 | 172 | NAC domain-containing protein 19 |
4dul_A | 2e-71 | 11 | 185 | 11 | 169 | NAC domain-containing protein 19 |
4dul_B | 2e-71 | 11 | 185 | 11 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |