 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC12036_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
NAC |
| Protein Properties |
Length: 331aa MW: 36592.4 Da PI: 8.5444 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC12036_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 172.9 | 9.7e-54 | 18 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97
lppGfrFhPtdeelvv+yLk+k+++ +l++ ++i++vd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++ ++
RrC12036_p1 18 LPPGFRFHPTDEELVVHYLKRKAASAPLPV-SIIADVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLASdGN 114
79****************************.89***************999999***************************************99677 PP
NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128
++vg+kk Lvfy+g+ pkg+k+dW+mheyrl
RrC12036_p1 115 QKVGVKKALVFYSGKPPKGVKSDWIMHEYRL 145
88***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MESTDSSGGP PPPPQPNLPP GFRFHPTDEE LVVHYLKRKA ASAPLPVSII ADVDLYKFDP 60
WELPAKASFG EQEWYFFSPR DRKYPNGARP NRAATSGYWK ATGTDKPVLA SDGNQKVGVK 120
KALVFYSGKP PKGVKSDWIM HEYRLIDNKP NNRPPGCDYG NKKNSLRLDD WVLCRIYKKN 180
NAGRHVDNEK DHDMIDYIFR KIPSGLNHNV SRSMNFFPGR FSGGYGMFSD GDPGLYDGSG 240
LMCSNPPMQS ISMSVMVIPL PKLLVTEEHD VSPSKRFHGV GGVGGGGDCS NMSSSMVEEP 300
PPLMQQQGGA LGDGLFRTTS YQLPGLNWYS T
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-73 | 12 | 184 | 11 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-73 | 12 | 184 | 11 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-73 | 12 | 184 | 11 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-73 | 12 | 184 | 11 | 170 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-73 | 12 | 184 | 14 | 173 | NAC domain-containing protein 19 |
| 3swm_B | 2e-73 | 12 | 184 | 14 | 173 | NAC domain-containing protein 19 |
| 3swm_C | 2e-73 | 12 | 184 | 14 | 173 | NAC domain-containing protein 19 |
| 3swm_D | 2e-73 | 12 | 184 | 14 | 173 | NAC domain-containing protein 19 |
| 3swp_A | 2e-73 | 12 | 184 | 14 | 173 | NAC domain-containing protein 19 |
| 3swp_B | 2e-73 | 12 | 184 | 14 | 173 | NAC domain-containing protein 19 |
| 3swp_C | 2e-73 | 12 | 184 | 14 | 173 | NAC domain-containing protein 19 |
| 3swp_D | 2e-73 | 12 | 184 | 14 | 173 | NAC domain-containing protein 19 |
| 4dul_A | 1e-73 | 12 | 184 | 11 | 170 | NAC domain-containing protein 19 |
| 4dul_B | 1e-73 | 12 | 184 | 11 | 170 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KF974761 | 0.0 | KF974761.1 Brassica napus NAC transcription factor 56-1 (NAC56-1.1) mRNA, complete cds. |
