PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC12036_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 331aa MW: 36592.4 Da PI: 8.5444

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC12036_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.9	9.7e-54	18	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeelvv+yLk+k+++ +l++ ++i++vd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++ ++ RrC12036_p1 18 LPPGFRFHPTDEELVVHYLKRKAASAPLPV-SIIADVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLASdGN 114 79**************************.89***********999999***********************************99677 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kk Lvfy+g+ pkg+k+dW+mheyrl RrC12036_p1 115 QKVGVKKALVFYSGKPPKGVKSDWIMHEYRL 145 88*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-65	14	180	IPR003441	NAC domain
PROSITE profile	PS51005	62.321	18	179	IPR003441	NAC domain
Pfam	PF02365	5.9E-28	19	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MESTDSSGGP PPPPQPNLPP GFRFHPTDEE LVVHYLKRKA ASAPLPVSII ADVDLYKFDP 60 WELPAKASFG EQEWYFFSPR DRKYPNGARP NRAATSGYWK ATGTDKPVLA SDGNQKVGVK 120 KALVFYSGKP PKGVKSDWIM HEYRLIDNKP NNRPPGCDYG NKKNSLRLDD WVLCRIYKKN 180 NAGRHVDNEK DHDMIDYIFR KIPSGLNHNV SRSMNFFPGR FSGGYGMFSD GDPGLYDGSG 240 LMCSNPPMQS ISMSVMVIPL PKLLVTEEHD VSPSKRFHGV GGVGGGGDCS NMSSSMVEEP 300 PPLMQQQGGA LGDGLFRTTS YQLPGLNWYS T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-73	12	184	11	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-73	12	184	11	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-73	12	184	11	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-73	12	184	11	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-73	12	184	14	173	NAC domain-containing protein 19
3swm_B	2e-73	12	184	14	173	NAC domain-containing protein 19
3swm_C	2e-73	12	184	14	173	NAC domain-containing protein 19
3swm_D	2e-73	12	184	14	173	NAC domain-containing protein 19
3swp_A	2e-73	12	184	14	173	NAC domain-containing protein 19
3swp_B	2e-73	12	184	14	173	NAC domain-containing protein 19
3swp_C	2e-73	12	184	14	173	NAC domain-containing protein 19
3swp_D	2e-73	12	184	14	173	NAC domain-containing protein 19
4dul_A	1e-73	12	184	11	170	NAC domain-containing protein 19
4dul_B	1e-73	12	184	11	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF974761	0.0	KF974761.1 Brassica napus NAC transcription factor 56-1 (NAC56-1.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018434020.1	0.0	PREDICTED: NAC transcription factor 56-like
Refseq	XP_018434054.1	0.0	PREDICTED: NAC transcription factor 56-like
Swissprot	Q9LD44	1e-180	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A078J2L8	0.0	A0A078J2L8_BRANA; BnaCnng30350D protein
STRING	Bo1g128420.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	0.0	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]