PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC118_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 99aa    MW: 11421.8 Da    PI: 10.1375
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC118_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.8e-07952344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT    + + +a + + ++   +W+ +a+ +g g++++++k ++
        RrC118_p3  9 SWTFKQNKMFERALAVYDKDtpdRWHNVANAVG-GKSAEEVKRHY 52
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.202256IPR017877Myb-like domain
SMARTSM007171.5E-6658IPR001005SANT/Myb domain
SuperFamilySSF466891.06E-12863IPR009057Homeodomain-like
CDDcd001675.31E-6952No hitNo description
Gene3DG3DSA:1.10.10.605.2E-4957IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MASNSRSSSW TFKQNKMFER ALAVYDKDTP DRWHNVANAV GGKSAEEVKR HYDILVEDLI  60
NIETGRVPLP NYKSSNKTFE SNSRGINDFN TRLMKNLRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-31192193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894931e-106AC189493.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084P16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444178.12e-68PREDICTED: protein RADIALIS-like 6
SwissprotQ1A1732e-56RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A397YRT93e-61A0A397YRT9_BRACM; Uncharacterized protein
STRINGBo6g119390.11e-57(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.27e-59RAD-like 6