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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC11828_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 200aa MW: 22881.4 Da PI: 9.7546 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.5 | 2.6e-12 | 14 | 45 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT+eEde+lv++vk++G +W++ ++ g RrC11828_p1 14 KGPWTPEEDEKLVKYVKKHGHSSWRALPKLAG 45 79**************************9998 PP | |||||||
2 | Myb_DNA-binding | 29.1 | 2.3e-09 | 70 | 94 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W+tIa+ ++ gRt++++k++w+++l RrC11828_p1 70 RWSTIANNLP-GRTDNEIKNFWNTHL 94 6*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.982 | 9 | 98 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-13 | 12 | 45 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.4E-18 | 13 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-10 | 14 | 46 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.62E-14 | 14 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.74E-14 | 16 | 94 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-13 | 69 | 99 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.7E-7 | 70 | 94 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MGRSPSGDDS GLKKGPWTPE EDEKLVKYVK KHGHSSWRAL PKLAGTTLYL VLIVNGFVFL 60 YCLLDDDVIR WSTIANNLPG RTDNEIKNFW NTHLKKKLIQ MGVDPMTHRP RTDVLSGLSQ 120 LISLSSDLRG FVDLQQQFPV NQEQTILKLQ TEMAKLQLFQ YLFQPPSMYN NINPKSISNG 180 ETTIGVLRLY FNNFFSFLKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC155342 | 1e-108 | AC155342.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH052O08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018444283.1 | 7e-96 | PREDICTED: transcription factor MYB39-like | ||||
Swissprot | Q9SBF3 | 1e-88 | MYB92_ARATH; Transcription factor MYB92 | ||||
TrEMBL | A0A178UPI6 | 3e-86 | A0A178UPI6_ARATH; MYB92 | ||||
STRING | AT5G10280.1 | 6e-87 | (Arabidopsis thaliana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10280.1 | 2e-81 | myb domain protein 92 |
Publications ? help Back to Top | |||
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