PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC11824_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HSF

Protein Properties

Length: 162aa MW: 19012.6 Da PI: 9.395

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC11824_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	44.6	3.9e-14	12	99	1	100
HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 aFl+k ye+++d++++++isw ng++fvv+++ + ++++Lp nfa F + YgF+k+ + ++ eF k F+kg+ elle+i RrC11824_p1 12 AFLNKAYELVDDPSTDKIISWAPNGRTFVVWKPLKCSSDLLPLRLGIANFARF----ESYGFSKIVSGQQ--------LEFLCKDFEKGHPELLERI 96 69****************************************999999987....89**99986........6***************9 PP XXX CS HSF_DNA-bind 98 krk 100 + RrC11824_p1 97 SDR 99 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	6.4E-17	6	93	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.4E-18	9	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.45E-15	10	96	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	9.4E-13	13	97	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MDFSTERTRI CAFLNKAYEL VDDPSTDKII SWAPNGRTFV VWKPLKCSSD LLPLRLGIAN 60 FARFESYGFS KIVSGQQLEF LCKDFEKGHP ELLERISDRY VAKLRAFYEK RYKPFEDRLK 120 NAKTKEEWDL AVKEQKEFFE NDSKERRASR PRTKSSPPAS EN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018450076.1	1e-113	PREDICTED: heat stress transcription factor A-4c-like
TrEMBL	A0A078GTE4	4e-62	A0A078GTE4_BRANA; BnaCnng04980D protein
TrEMBL	A0A0D3DMG4	4e-62	A0A0D3DMG4_BRAOL; Uncharacterized protein
STRING	Bo8g049370.1	7e-63	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14212	11	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	1e-17	heat shock transcription factor B4