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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC1179_p6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bZIP | ||||||||
Protein Properties | Length: 321aa MW: 34432.7 Da PI: 9.6156 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 41.6 | 2.6e-13 | 264 | 314 | 5 | 55 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rr++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+ + e+ ++ RrC1179_p6 264 RRQRRMIKNRESAARSRARKQAYTLELEAEIEKLKKVNQELQRKQAEMMEM 314 69*************************************998776666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.9E-10 | 260 | 318 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.53 | 262 | 313 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.44E-10 | 264 | 313 | No hit | No description |
CDD | cd14707 | 5.66E-24 | 264 | 316 | No hit | No description |
Pfam | PF00170 | 9.4E-11 | 264 | 314 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 6.1E-13 | 264 | 313 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 267 | 282 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MAARVEAVSA HLSSLPAASL AFSQSSRKHL GILKKVNTSS MGTHINFSNI GGGGGGGGGG 60 SNQMKPTDTA YPLARQSSLY SLTFDELQST LGGPGKDFGS MNMDELLKSI WTAEEAQAMT 120 MNPSSSSAAA TAVAQPGGGG GIPLQRQGSL TLPRTISQKT VDEVWKCLFT KDGNMVGSSG 180 ETNAPQRQQT LGEITLEEFL CRAGVVREDN CSQQVDPVGG NNGFYTAATS PGTSSAENNS 240 LSPVPYVLNR GRRSNTGLEK VIERRQRRMI KNRESAARSR ARKQAYTLEL EAEIEKLKKV 300 NQELQRKQAE MMEMQKNEVI V |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates abscisic acid (ABA) signaling (PubMed:18931143, PubMed:19947981, PubMed:27424498, PubMed:27325665). Can regulate the expression of a wide spectrum of stress-related genes in response to abiotic stresses through an ABA-dependent regulation pathway. Confers ABA-dependent drought and salinity tolerance (PubMed:18931143, PubMed:27325665). Binds specifically to the ABA-responsive elements (ABRE) in the promoter of target genes to mediate stress-responsive ABA signaling (PubMed:27325665, PubMed:27424498). {ECO:0000269|PubMed:18931143, ECO:0000269|PubMed:19947981, ECO:0000269|PubMed:27325665, ECO:0000269|PubMed:27424498}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) (PubMed:18315698, PubMed:18931143). Induced by drought, salt and osmotic stresses (PubMed:18931143). {ECO:0000269|PubMed:18315698, ECO:0000269|PubMed:18931143}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX122894 | 1e-122 | JX122894.1 Brassica napus ABA-responsive element binding factor 4 (ABF4.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013686796.1 | 1e-124 | ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X1 | ||||
Refseq | XP_022555302.1 | 1e-124 | ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X1 | ||||
Swissprot | Q6Z312 | 3e-79 | BZP23_ORYSJ; bZIP transcription factor 23 | ||||
TrEMBL | M4E0W2 | 1e-135 | M4E0W2_BRARP; Uncharacterized protein | ||||
STRING | Bra022409.1-P | 1e-136 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM27219 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19290.3 | 1e-69 | ABRE binding factor 4 |