 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC11671_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
TALE |
| Protein Properties |
Length: 463aa MW: 52876.4 Da PI: 6.7616 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC11671_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 25.5 | 2.3e-08 | 376 | 414 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54
+F++ ++yp+ +e+ LA + gLt +qV++WF N R +
RrC11671_p1 376 MFQNflHPYPKDSEKHLLAIRSGLTRSQVSNWFINARVR 414
5887779******************************88 PP
|
| 2 | BELL | 91 | 1.2e-29 | 251 | 321 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
+rq+l++kk++Ll+ll++Vd+rY+++v++++tv+s+F+a+++l++ +++t++Al++iS +++L+++i+++i
RrC11671_p1 251 QRQALEAKKTHLLDLLQMVDDRYSHCVDEIHTVVSAFHAATELDP-QLHTRFALQTISYLYKNLRERISKKI 321
689******************************************.***********************998 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0008285 | Biological Process | negative regulation of cell proliferation |
| GO:0009640 | Biological Process | photomorphogenesis |
| GO:0010073 | Biological Process | meristem maintenance |
| GO:0010227 | Biological Process | floral organ abscission |
| GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
| GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process |
| GO:0090470 | Biological Process | shoot organ boundary specification |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 463 aa
Download sequence Send
to blast |
MDNNNTFSSL DNVMTNQNYL LMDLIPSRED PTSFSTMLPW NSIRQDPLQM GGFDIFNSFL 60
TNKYLSSTPR STNVQETSFE AMAPPPPPPP LHHLDHFRPP YDDSSNNMWS LGENSEFHAY 120
PYVEGVVGPS EPIISTFGEE DFPRNELSLS LATDVSDECS GMSLCAATKY TRISSEQASS 180
STKNVSNNVS RVIFGSKYLH SVQEILSHFA TYSLNGIENN PQCYFSSRET ESEGTNSAYE 240
NLNEFLDGGS QRQALEAKKT HLLDLLQMVD DRYSHCVDEI HTVVSAFHAA TELDPQLHTR 300
FALQTISYLY KNLRERISKK ILVMGSVLER GKEKSQEDSI FHQHCLLQQL KRKNHQIWRP 360
QRGLPEKSVS VLRTWMFQNF LHPYPKDSEK HLLAIRSGLT RSQVSNWFIN ARVRLWKPMI 420
EDMYAEMNKR KMSNTHLQGG NGGSITRVPK SVMMSQGRDK IRE
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY072174 | 0.0 | AY072174.1 Arabidopsis thaliana putative homeobox gene ATH1 protein (At4g32980) mRNA, complete cds. |
| GenBank | AY096513 | 0.0 | AY096513.1 Arabidopsis thaliana putative homeobox gene ATH1 protein (At4g32980) mRNA, complete cds. |
| GenBank | X80126 | 0.0 | X80126.1 A.thaliana AtH1 mRNA. |
