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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC11514_p1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
NAC |
Protein Properties |
Length: 333aa MW: 37416.7 Da PI: 8.5428 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC11514_p1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 158.6 | 2.5e-49 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98
lppGfrF Ptdeel+v+yL++k++g++++l + i+e+d+yk++ w Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk + + +g+
RrC11514_p1 14 LPPGFRFYPTDEELMVDYLCRKAAGHDFSL-QLIAEIDLYKFDAWVLPSKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVIST-EGR 109
79***************************9.89***************8777899**********************************99999.999 PP
NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128
vg+kk Lvfy g+apkg+kt+W+mheyrl
RrC11514_p1 110 RVGIKKALVFYIGKAPKGTKTNWIMHEYRL 139
9***************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009414 | Biological Process | response to water deprivation |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 333 aa
Download sequence Send
to blast |
MGIQELDPLA QLSLPPGFRF YPTDEELMVD YLCRKAAGHD FSLQLIAEID LYKFDAWVLP 60 SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVISTEGRR VGIKKALVFY 120 IGKAPKGTKT NWIMHEYRLI EPSRRNGSTK LDDWVLCRIY KKQSSAQRQA YGNLMTTTSE 180 YSNNGSSTST SSHHYDDVLE SLHEIDNRSL GYAAGSSNAV PHYSHRPALT EQKTGFLNLA 240 REPSYDWTNF GGHNTVPELR RSHNVPSLRY GDGGGYLHGV KTNEEEDKTK QQHAEGIPRF 300 NNSGVLAPDQ GFHVDPVNGF GYSGQQPGGF GFM
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 1e-118 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-118 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-118 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-118 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-118 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-118 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-118 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-118 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-118 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-118 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-118 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-118 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-118 | 1 | 168 | 4 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-118 | 1 | 168 | 4 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Strongly induced by high salinity. Slightly up-regulated by drought, abscisic acid (ABA) and jasmonic acid. Not induced by cold treatment. {ECO:0000269|PubMed:15319476}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ670121 | 0.0 | KJ670121.1 Brassica napus NAC transcription factor 55-1 (NAC55-1.1) mRNA, complete cds. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Zheng XY, et al.
Coronatine promotes Pseudomonas syringae virulence in plants by activating a signaling cascade that inhibits salicylic acid accumulation. Cell Host Microbe, 2012. 11(6): p. 587-96 [PMID:22704619] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Zhu X, et al.
Jasmonic acid promotes degreening via MYC2/3/4- and ANAC019/055/072-mediated regulation of major chlorophyll catabolic genes. Plant J., 2015. 84(3): p. 597-610 [PMID:26407000] - Takasaki H, et al.
SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] - Gimenez-Ibanez S, et al.
JAZ2 controls stomata dynamics during bacterial invasion. New Phytol., 2017. 213(3): p. 1378-1392 [PMID:28005270] - Hickman R, et al.
Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network. Plant Cell, 2017. 29(9): p. 2086-2105 [PMID:28827376] - Fu Y,Ma H,Chen S,Gu T,Gong J
Control of proline accumulation under drought via a novel pathway comprising the histone methylase CAU1 and the transcription factor ANAC055. J. Exp. Bot., 2018. 69(3): p. 579-588 [PMID:29253181]
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