 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC11452_p2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
C3H |
| Protein Properties |
Length: 253aa MW: 29097.5 Da PI: 8.4554 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC11452_p2 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 24.5 | 4.8e-08 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
C f+++ G+C+yG rC++ H+
RrC11452_p2 34 VCTFYQK-GICSYGTRCRYEHV 54
5******.***********997 PP
|
| 2 | zf-CCCH | 20.7 | 7.3e-07 | 80 | 101 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26
++C+ fa+ G C++G++C+ +Hg
RrC11452_p2 80 PICS-FAAAGDCPRGSQCPHMHG 101
7899.**************9998 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 14.784 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.8E-4 | 2 | 27 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.57E-7 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.97E-5 | 30 | 53 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.5E-4 | 31 | 55 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.7E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.169 | 34 | 56 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.1E-5 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.361 | 76 | 103 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0039 | 77 | 102 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF57850 | 2.18E-13 | 133 | 209 | No hit | No description |
| Gene3D | G3DSA:3.30.40.10 | 1.6E-10 | 136 | 204 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| CDD | cd00162 | 0.00474 | 144 | 204 | No hit | No description |
| SMART | SM00184 | 8.7E-8 | 145 | 202 | IPR001841 | Zinc finger, RING-type |
| Pfam | PF00097 | 4.9E-8 | 145 | 202 | IPR018957 | Zinc finger, C3HC4 RING-type |
| PROSITE profile | PS50089 | 12.386 | 145 | 203 | IPR001841 | Zinc finger, RING-type |
| PROSITE pattern | PS00518 | 0 | 169 | 178 | IPR017907 | Zinc finger, RING-type, conserved site |
| Sequence ? help Back to Top |
| Protein Sequence Length: 253 aa
Download sequence Send
to blast |
MSDRILCKFF VHGSCLKGEN CEYSHDSKHH ANNVCTFYQK GICSYGTRCR YEHVRTSQHK 60
GDHGDNKPLN LCYTHPREHP ICSFAAAGDC PRGSQCPHMH GDICSTCGKK CLHPFRPEER 120
EEHTKECQKK QKHMEALKKS QDIECSVCLD RVLSKATPGE RKFGLLTECH HPFCIQCIRN 180
WRSSAPVSGM DVNSTLRACP ICRKLSYFVV PSVVWYSTPE EKKEIIDIYK AKLRYKLYLT 240
CLSSPFDMAW LSR
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
