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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC1144_p1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
NAC |
Protein Properties |
Length: 249aa MW: 27776.1 Da PI: 7.8523 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC1144_p1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 103.9 | 2.1e-32 | 6 | 78 | 55 | 128 |
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
k+wyf+s+rd+kyatg r+nrat++gyWkatgkd+++l+ k++lvg++ktLvfy+grap+g+ktdWvmhe+rl
RrC1144_p1 6 GKDWYFYSQRDRKYATGLRTNRATATGYWKATGKDRAILR-KSKLVGMRKTLVFYQGRAPRGRKTDWVMHEFRL 78
689************************************9.999****************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 249 aa
Download sequence Send
to blast |
TACVGGKDWY FYSQRDRKYA TGLRTNRATA TGYWKATGKD RAILRKSKLV GMRKTLVFYQ 60 GRAPRGRKTD WVMHEFRLQG SFDPPTLNSP EVQEDWVLCR VFHKNTEGVL SRDNVGSCFD 120 ETASASLPPL MDSYINFDQE PSSYLGDDQH FITNEQVPCF SNLSKNQTLT NSVSELKKNP 180 IPLFTGGSAP TRLPGLDSFC SSDQMVLRAL LSQLTKIDGG IDVKESQSYG EGSSESFLTD 240 IGIPSTAWN
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 3e-32 | 2 | 106 | 66 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-32 | 2 | 106 | 66 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-32 | 2 | 106 | 66 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-32 | 2 | 106 | 66 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-32 | 2 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swm_B | 3e-32 | 2 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swm_C | 3e-32 | 2 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swm_D | 3e-32 | 2 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swp_A | 3e-32 | 2 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swp_B | 3e-32 | 2 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swp_C | 3e-32 | 2 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swp_D | 3e-32 | 2 | 106 | 69 | 170 | NAC domain-containing protein 19 |
4dul_A | 3e-32 | 2 | 106 | 66 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-32 | 2 | 106 | 66 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by auxin. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KC966749 | 0.0 | KC966749.1 Brassica napus NAC transcription factor 22 (NAC22.1) mRNA, complete cds. |
Publications
? help Back to Top |
- Le Hénanff G, et al.
Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Xiao D, et al.
SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] - Huo X,Wang C,Teng Y,Liu X
Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] - Chen X, et al.
Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] - Liu C,Wang B,Li Z,Peng Z,Zhang J
TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]
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