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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC11429_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 296aa MW: 32975 Da PI: 8.3307 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.5 | 3.2e-29 | 146 | 205 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++fpr+Y++C+ a +C+vkkkv+rs ed++v++ tYegeHnh+ RrC11429_p1 146 VKDGYQWRKYGQKVTRDNPFPRAYFKCACApSCSVKKKVQRSVEDQSVLVATYEGEHNHP 205 58**************************999****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-27 | 138 | 207 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.842 | 141 | 207 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.36E-25 | 143 | 207 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-32 | 146 | 206 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-23 | 147 | 205 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MDQPSFVDTS LDLTIGVTRM RVEEDTTTSA LVDELNRVSA ENKKLSEMLS LMCENYNGLR 60 KQLTEYVNKS NNMTERDQTS PPKKRKSPAR EDALSSAVIC GVSESSSTDQ DEQYLCKKKQ 120 REETVVKEKV SRVYYKTEAS ETTLVVKDGY QWRKYGQKVT RDNPFPRAYF KCACAPSCSV 180 KKKVQRSVED QSVLVATYEG EHNHPMPSQI DSNSGLNRYL SLGGHTAPAK GSSSSLAEPV 240 TESKKATTSP SRMDIPEVQK LLVEQMASSL TKDPNFTAAL AAAVTGRLYQ QNQTEK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-21 | 145 | 208 | 16 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-21 | 145 | 208 | 16 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU912406 | 0.0 | EU912406.1 Brassica napus WRKY40-1 transcription factor (WRKY40-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018446637.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 1e-176 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | M4CHA5 | 0.0 | M4CHA5_BRARP; Uncharacterized protein | ||||
STRING | Bra003588.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2477 | 28 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 1e-178 | WRKY DNA-binding protein 40 |