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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
RrC11410_p2 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
C3H |
| Protein Properties |
Length: 282aa MW: 29456 Da PI: 9.3252 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC11410_p2 | genome | MSU | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 21.5 | 4e-07 | 68 | 91 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25
k ++C f+ t C++Gd+C+F H
RrC11410_p2 68 KSKPCTKFFSTSGCPFGDNCHFLH 91
7789******************** PP
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| 2 | zf-CCCH | 33.2 | 9.1e-11 | 248 | 273 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+ C +fa+ G C +GdrC+FaHg+
RrC11410_p2 248 FKTKMCERFAK-GNCTFGDRCHFAHGE 273
69*********.*************96 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 0.068 | 66 | 93 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.084 | 66 | 94 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.7E-6 | 67 | 93 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.4E-8 | 68 | 91 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.0E-5 | 68 | 91 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 5.41E-15 | 137 | 219 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:3.30.1370.10 | 2.1E-15 | 147 | 218 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 1.1E-10 | 147 | 217 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 14.571 | 148 | 212 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 1.5E-11 | 150 | 212 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 1.42E-13 | 150 | 212 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 7.8E-16 | 242 | 277 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.96E-8 | 247 | 277 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 9.1E-7 | 247 | 273 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.765 | 247 | 274 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.6E-7 | 248 | 273 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 282 aa
Download sequence Send
to blast |
RKNLICLDDN HHHHIRTQRV SNSDLYFLHG YSEDGLKLLV RSTPMAAAAE DSRSLSKMES 60
YSTGLGSKSK PCTKFFSTSG CPFGDNCHFL HYVPGGYNAV AQLTNMAPML PQASRNMQGS 120
GGGGGGGRFS GRGGGESGPG HVSSFGASAT AKISVDASLA GAIIGKGGVS SKQICRQTGA 180
KLSIQDHERD PNLKNIELEG TFEQINEASA MLIGRLNSAA SRRPPGAGGG GLGGGVGSEG 240
KPHPGSNFKT KMCERFAKGN CTFGDRCHFA HGEAELRRSG IA
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