PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC11372_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 404aa MW: 43570 Da PI: 5.6771 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99 | 2.9e-31 | 196 | 254 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+ RrC11372_p1 196 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSEHNHP 254 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-31 | 189 | 256 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.361 | 190 | 256 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.94E-27 | 193 | 256 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-38 | 195 | 255 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.4E-26 | 197 | 254 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MDNFQGDLTD VVRGIGSGHV SSSTGPPEGP SPSTLSPQPI SDVPSIASCQ INPFGDPFVS 60 MTDPLFNLTA NKSNNSFEVF PEVSEDDHIK SQCSVFPRIQ ISQSNIIHDA SKCSSPNMAV 120 SSAVAAASPW GMITNSPRNS LMVDKSNNTS SSSMIQISSS PRNLGIKKRK GQGKKVVCIP 180 APAAMNSRSS GEVVPSDLWA WRKYGQKPIK GSPYPRGYYR CSSSKGCPAR KQVERSRTDP 240 NMLVITYTSE HNHPWPTQRN ALAGSTRSSS SSFSNPSSKS STAIGTSTTS ASSRVSQNKD 300 EPIKSHLASS STPPSPYVAA AVKEEGVEER QDKMEFDNDV DDTYRPEFQH QPEGFFADLD 360 ELEEDSLTML LSQGFSGGGG NLENKTTIPD VFSDFFDDDS SRSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 3e-25 | 174 | 257 | 6 | 80 | Disease resistance protein RRS1 |
5w3x_D | 3e-25 | 174 | 257 | 6 | 80 | Disease resistance protein RRS1 |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 169 | PRNLGIKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ012167 | 0.0 | FJ012167.1 Brassica napus WRKY35 transcription factor (WRKY35) mRNA, complete cds. | |||
GenBank | KC246578 | 0.0 | KC246578.1 Brassica napus WRKY transcription factor 35.1 (WRKY35.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018439076.1 | 0.0 | PREDICTED: probable WRKY transcription factor 35 | ||||
Swissprot | O64747 | 0.0 | WRK35_ARATH; Probable WRKY transcription factor 35 | ||||
TrEMBL | A0A3N6RIP8 | 0.0 | A0A3N6RIP8_BRACR; Uncharacterized protein | ||||
STRING | Bra005388.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3085 | 28 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 1e-164 | WRKY DNA-binding protein 35 |
Publications ? help Back to Top | |||
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