PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC11369_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 584aa MW: 65381.5 Da PI: 5.3366 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.6 | 1.2e-14 | 389 | 436 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h Er+RR+++N++f +Lr+++P+ + K +K++iL ++eY+++Lq RrC11369_p1 389 ANHALSERKRREKLNDRFITLRSMIPSiS------KTDKVSILDDTIEYLQELQ 436 58999**********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 9.0E-42 | 14 | 179 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.358 | 386 | 435 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.67E-19 | 388 | 454 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-12 | 389 | 436 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.01E-15 | 390 | 440 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.6E-18 | 390 | 448 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.2E-18 | 392 | 441 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 584 aa Download sequence Send to blast |
MATVENRMMP ENLKKHLAVS WGDGYYNGDI KTRKTVQASE VKADQLGLER SEQLRELYES 60 LSLAESSTSC GSQVNRRASA SSLSPEDLTD TEWYYLVCMS FVFNIGEGVP GGVLANGQPI 120 WLCNAHTADS KVFTRSLLAK SASLLTVVCF PFLGGVLEIG TTEHVAENLN VIQCVKTLFL 180 EAPHGTLSTR SDYQEIFDPL SHDKYIPVFG TEAFPTTSTS VYEQEPDDHD SFINGGGASQ 240 VQSWQFVGEE LSNCVHQPLN SSDCVSQTFV GTTGRVTCGP RKSRNQRLDQ IQEQNNRVNM 300 DDDVHYQGVI STIFKTTHQL VLGPQFQNFD KRSSFTRWRR SSLSAKTLGE KSQNMLKKII 360 SEVPRMHQKK ALLPDTPEDS GFKVGDETAN HALSERKRRE KLNDRFITLR SMIPSISKTD 420 KVSILDDTIE YLQELQRRVQ ELESCRESDG KEMRMAMKRK KMEDEDERVS ANCLKSKRKE 480 SESDVNVEED EPADTGYAGL TDNLRIGSFG NEVVIELRCA WREGILLEIM DVISDLNLDS 540 HSVQSSTGDG LLCLTVNCKH KGTKIATTGV IQNALQRVAW IFVD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 9e-11 | 17 | 179 | 45 | 192 | Transcription factor MYC3 |
4rqw_B | 9e-11 | 17 | 179 | 45 | 192 | Transcription factor MYC3 |
4rs9_A | 9e-11 | 17 | 179 | 45 | 192 | Transcription factor MYC3 |
4yz6_A | 9e-11 | 17 | 179 | 45 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 394 | 399 | ERKRRE |
2 | 395 | 400 | RKRREK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with MYB75/PAP1, MYB90/PAP2 or TT2. Involved in epidermal cell fate specification. Regulates negatively stomata formation but promotes trichome formation. Together with MYB66/WER, promotes the formation of non-hair cells in root epidermis cells in the N position. Whereas together with CPC, promotes the formation of hair cells in root epidermis cells in the H position by inhibiting non-hair cell formation. Seems also to play a role in the activation of anthocyanin biosynthesis, probably together with MYB75/PAP1. Involved in seed mucilage production. Activates the transcription of GL2. {ECO:0000269|PubMed:12917293, ECO:0000269|PubMed:12956536, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15590742}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By UV treatment. Negatively regulated by MYB66/WER, GL3 and BHLH2 in the developing non-hair cells, and positively regulated by CPC and TRY in the developing hair cells. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:15590742}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF188207 | 0.0 | KF188207.1 Brassica villosa BVEGL3-1 (BVEGL3-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018453023.1 | 0.0 | PREDICTED: transcription factor EGL1-like | ||||
Swissprot | Q9CAD0 | 0.0 | EGL1_ARATH; Transcription factor EGL1 | ||||
TrEMBL | C4WRH0 | 0.0 | C4WRH0_RAPSA; Putative transcription factor | ||||
STRING | Bra027653.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2592 | 28 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G63650.3 | 0.0 | bHLH family protein |