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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC11353_p1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
bZIP |
Protein Properties |
Length: 385aa MW: 43668.9 Da PI: 6.3301 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC11353_p1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 29 | 2.4e-09 | 98 | 140 | 4 | 46 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46
+k rr+++NReAAr+sR+RKka +++Lee +L++ ++L+
RrC11353_p1 98 DKMKRRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQELA 140
7999**************************8888887776665 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway |
GO:0042742 | Biological Process | defense response to bacterium |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0005516 | Molecular Function | calmodulin binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 385 aa
Download sequence Send
to blast |
MEMMMSSSSS STTQVASLRE IGMYEPFQQL SGWENAFNTI GSSSNQNNNN PSSSTVPEVD 60 ARAEADDHNK ANYTSMYNNS VEAEPSSNND QDEDQVNDKM KRRLAQNREA ARKSRLRKKA 120 HVQQLEESRL KLSQLEQELA RARQQGLCVR NSSDTSYLGP AGTMNTGIAT FEMEYTHWLE 180 EQNKRVSEIR RALQAHISDI ELKMLVDTCL NHYANLFRMK ADAAKADVFF LISGMWRTST 240 ERFFQWIGGF RPSELLNVVM PYIEPLTDQQ LLEVRNLQQS SQQAEEALSQ GLDKLQQGLV 300 ENIAIDIRVV ESVSHGAQMA SAMENLQALE GFVNQADHLR KQTLQQMSKI LTTRQAARGL 360 LALGEYFHRL RALSSLWAAR PRERT
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. {ECO:0000269|PubMed:12897257}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU110098 | 0.0 | EU110098.1 Brassica juncea bZIP transcription factor (CdR15) mRNA, complete cds. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Gangadharan A,Sreerekha MV,Whitehill J,Ham JH,Mackey D
The Pseudomonas syringae pv. tomato type III effector HopM1 suppresses Arabidopsis defenses independent of suppressing salicylic acid signaling and of targeting AtMIN7. PLoS ONE, 2013. 8(12): p. e82032 [PMID:24324742] - Herrera-Vásquez A, et al.
Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] - Fang H, et al.
The Ca2+ /calmodulin2-binding transcription factor TGA3 elevates LCD expression and H2 S production to bolster Cr6+ tolerance in Arabidopsis. Plant J., 2017. 91(6): p. 1038-1050 [PMID:28670772] - Sarkar S, et al.
Interaction of Arabidopsis TGA3 and WRKY53 transcription factors on Cestrum yellow leaf curling virus (CmYLCV) promoter mediates salicylic acid-dependent gene expression in planta. Planta, 2018. 247(1): p. 181-199 [PMID:28913593]
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