PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC11268_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 329aa MW: 36573.8 Da PI: 7.6608 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.8 | 8.1e-13 | 261 | 306 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + a++L +Av+YIk+Lq RrC11268_p1 261 SIAERVRRTKISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 306 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.262 | 255 | 305 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.76E-16 | 258 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.41E-12 | 259 | 308 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.4E-14 | 260 | 317 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-12 | 261 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.9E-10 | 261 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MDSNTHNHLY DPNHIPPSGS SLLRFRSAPS SVLAAFVDDD NNKSGLGGSS DRLLSRFSGS 60 NGSNEFEAKS PVSLTNTSVS YAASLPPPPQ QQQPEPSGFL GLPPHYPRQS KGMMNTIGYG 120 SVRSLMDYVG EEEDQASPSS SNELRRHNSL SSRPPSSLGM LSQIPEIASE SSFQYSHWND 180 PASFIDNLSS SLKRETEDDD GKLFQNGESG NRMQLLSHHL SLPKSLSTAS DMVSVDKYMQ 240 LQDSVPCKIR AKRGCATHPR SIAERVRRTK ISERMRKLQE LVPNMDKQTN TADMLDLAVD 300 YIKDLQRQYK ILNENRANCK CMHKEKNLI |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00308 | DAP | Transfer from AT2G42280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228981 | 1e-171 | AK228981.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL16-28-L05. | |||
GenBank | BT015339 | 1e-171 | BT015339.1 Arabidopsis thaliana At2g42280 gene, complete cds. | |||
GenBank | BT015712 | 1e-171 | BT015712.1 Arabidopsis thaliana At2g42280 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018480230.1 | 0.0 | PREDICTED: transcription factor bHLH130-like | ||||
Swissprot | Q66GR3 | 1e-169 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | M4DK58 | 1e-174 | M4DK58_BRARP; Uncharacterized protein | ||||
STRING | Bra016886.1-P | 1e-175 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6293 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 1e-145 | bHLH family protein |
Publications ? help Back to Top | |||
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