PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC11261_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 206aa MW: 22759.2 Da PI: 6.7904 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.1 | 6.5e-05 | 46 | 68 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H RrC11261_p1 46 YTCNFCRREFRSAQALGGHMNVH 68 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.14E-6 | 43 | 73 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.2E-4 | 44 | 70 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0073 | 46 | 68 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.1E-5 | 46 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.198 | 46 | 73 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 48 | 68 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MYGGAWMWNP SEVERLEDDD ESWEVKAFEQ DTKGNISGTT WPPRSYTCNF CRREFRSAQA 60 LGGHMNVHRR DRASKAHQGP AAAAAARSGG RSRGGKKAFL NSCVLPTATL IIQSTASNIE 120 GLSHFYQLQN PNSMFGHSSD TVNFYGSTSF PSSNLDFSVL NSPVEVPPRL IDYSKGDEES 180 IGSMKETKRT SVDEPDLELR LGHKPP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-13 | 41 | 68 | 2 | 29 | superman protein |
2l1o_A | 2e-13 | 41 | 68 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC183492 | 1e-180 | AC183492.1 Brassica oleracea Contig G, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018481481.1 | 1e-154 | PREDICTED: probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | A0A0D3DEQ1 | 1e-143 | A0A0D3DEQ1_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6ER72 | 1e-143 | A0A3P6ER72_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g105490.1 | 1e-143 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5284 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 1e-110 | C2H2 family protein |