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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC11235_p1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
bZIP |
Protein Properties |
Length: 394aa MW: 43403.6 Da PI: 7.0825 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC11235_p1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 34.2 | 5.6e-11 | 237 | 296 | 4 | 63 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
kr +r NR++A rs +RK +++eLe kv +L+ eN aL + +l ++ l++++
RrC11235_p1 237 PKRVKRILANRLSAARSKERKMLYTAELEHKVHTLQRENAALSAHVTHLHGHSTGLQNQN 296
5999******************************************99998887777766 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 394 aa
Download sequence Send
to blast |
MMMRPNSSSS SSVPNQHLNR VPLPYTGDRV GAPSPIPPAT LPPNHSMPAM EEITVAGFSP 60 YLPPSPFTMY HPTSRMVAGG ENILPPPGKS HMRSNSDDVT FGFSSMMPQP LNSLPPLVPS 120 KPLERSISGG REVSAFRGRT SESEDDIIRA YMEEEMESGR GTTRKKTNGG SGSEGIASPA 180 CGHYRSVSLD SCFLGRPSSD SGEGAYSVEF GNCEFSPDEI ERITADEKLA EIVVAEPKRV 240 KRILANRLSA ARSKERKMLY TAELEHKVHT LQRENAALSA HVTHLHGHST GLQNQNSELR 300 FRLQAMEQQA HLRNALSEKL TEEVQRLRLF IGVPSGSESN ISKTSLNPEM FEQQLRISQL 360 QHQHSNQNNS TMNANPASNG YFSQLSDDPQ FRHI
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC189480 | 2e-47 | AC189480.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB082F21, complete sequence. |