PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11221_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 296aa    MW: 32572 Da    PI: 9.6402
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11221_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-13556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l+ +v+++G+g Wk I r          R+  ++k++w+++
      RrC11221_p2  5 KLKWTEEEEEALLAGVRKHGPGKWKNILRDAEfagqlSQRSNIDLKDKWRNL 56
                     689**********************************99***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.18162IPR017930Myb domain
SuperFamilySSF466892.08E-15359IPR009057Homeodomain-like
SMARTSM007177.1E-8459IPR001005SANT/Myb domain
PfamPF002493.4E-10556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-14556IPR009057Homeodomain-like
CDDcd116601.96E-12756No hitNo description
SMARTSM005263.0E-15121187IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.104.4E-11122198IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.81E-14122202IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.313123199IPR005818Linker histone H1/H5, domain H15
PfamPF005382.9E-11125197IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGNQKLKWTE EEEEALLAGV RKHGPGKWKN ILRDAEFAGQ LSQRSNIDLK DKWRNLSVAP  60
DIQGSKDKVR TPKIKAAAFQ LAAVAAASSP SPSSSHSPVP PLPRSVSDLS IDDSVNFTVD  120
AKNAPRYDGM IFEALSSLTD ANGSDVTAIF NFIVQKGHEV PPNFKRILGS RLRRLASQGK  180
LEKVSQLKSG TQNFYKMNGH SFMAMRTPTL ARPKEVNVKP RQANSQGPTV SQEKFDHAAG  240
TAAFKFVEVD EKLETLNAAV EERDRMIELA EQAELILLLA EELHKECSQG KIVALN
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728871e-109AC172887.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004B22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450895.10.0PREDICTED: telomere repeat-binding factor 4-like isoform X1
SwissprotF4I7L11e-127TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A3P6BYT71e-180A0A3P6BYT7_BRACM; Uncharacterized protein
TrEMBLM4DJC01e-180M4DJC0_BRARP; Uncharacterized protein
STRINGBra016598.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-110MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]