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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC11149_p1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
HSF |
Protein Properties |
Length: 283aa MW: 32339.8 Da PI: 9.6679 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC11149_p1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 73.8 | 3.1e-23 | 8 | 74 | 28 | 103 |
EEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
HSF_DNA-bind 28 fvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103
+ +l + fa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ Fk+g+k+ll++i+r+k++
RrC11149_p1 8 MTLLSSFGFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKRGEKHLLCEIHRRKTS 74
566677789*******************************99.........**********************987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 283 aa
Download sequence Send
to blast |
MLFLGEMMTL LSSFGFARDL LPNYFKHNNF SSFVRQLNTY GFRKIVPDRW EFANEFFKRG 60 EKHLLCEIHR RKTSQMLPNQ HSPFMTHHPP PPQIPFSAAG ASFFSLPPPV DAADDQYWCE 120 SPPPRARVVI PTTVDAQVTA LTEDNERLRR SNTVLMSELA HMKKLYNDII YFVQNHVKPV 180 APSNTYLSSF LQKQQQPPPP PPIDYYTVPN LNALHSPPTS QSSITVLEDD TNHESNTRKT 240 KLFGVSLPSS KKRSHHFSDQ STKTRLLLDK SDLGLNLMTA STR
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB493499 | 9e-71 | AB493499.1 Arabidopsis thaliana At1g46264 mRNA for hypothetical protein, partial cds, clone: RAAt1g46264. |