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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC11089_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HSF | ||||||||
Protein Properties | Length: 241aa MW: 28214 Da PI: 6.6995 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111 | 8.3e-35 | 14 | 105 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F+ k+y++++d++++ li+w nsfvv d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F +g+++ll++i RrC11089_p3 14 FVAKTYQMVNDPSTDWLITWGPAHNSFVVADPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEHFLRGQTHLLKNIG 101 9********************999*****************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k+ RrC11089_p3 102 RRKH 105 *997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.5E-37 | 4 | 98 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.0E-56 | 10 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.25E-33 | 11 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.2E-30 | 14 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.3E-19 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.3E-19 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 53 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.3E-19 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MEDKNNNTNV IAPFVAKTYQ MVNDPSTDWL ITWGPAHNSF VVADPLDFSQ RILPAYFKHN 60 NFSSFVRQLN TYGFRKVDPD RWEFANEHFL RGQTHLLKNI GRRKHARGMM YGQEVEDNGE 120 VVKEIERLKD EQRELELEIQ RMNQRIEATE KRPEQMMAFL YKVVDDPDLL PRMMLEKERT 180 KQVSDKKKRR VTVKSEDQEE ENGRVFGVVS PSPSPPENSM GWVVPMRFGS YNETGLVVNS 240 M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 8e-26 | 11 | 103 | 17 | 120 | Heat shock factor protein 1 |
5hdg_A | 8e-26 | 11 | 103 | 7 | 110 | Heat shock factor protein 1 |
5hdn_A | 8e-26 | 11 | 103 | 7 | 110 | Heat shock factor protein 1 |
5hdn_B | 8e-26 | 11 | 103 | 7 | 110 | Heat shock factor protein 1 |
5hdn_C | 8e-26 | 11 | 103 | 7 | 110 | Heat shock factor protein 1 |
5hdn_D | 8e-26 | 11 | 103 | 7 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 189 | KKKRR |
2 | 185 | 190 | KKKRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00379 | DAP | Transfer from AT3G24520 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018490603.1 | 1e-168 | PREDICTED: heat stress transcription factor C-1-like | ||||
Swissprot | Q9LV52 | 1e-122 | HSFC1_ARATH; Heat stress transcription factor C-1 | ||||
TrEMBL | A0A397YIC5 | 1e-148 | A0A397YIC5_BRACM; Uncharacterized protein | ||||
STRING | Bo7g033000.1 | 1e-144 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6775 | 27 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 1e-125 | heat shock transcription factor C1 |
Publications ? help Back to Top | |||
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