PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1106_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 271aa    MW: 30657.4 Da    PI: 6.2611
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1106_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA572.7e-18180213134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 Cs+Cgt +Tp+WR gp g+ktLCnaCG+++++ +
  RrC1106_p1 180 CSHCGTNTTPQWRTGPVGPKTLCNACGVRFKSGR 213
                 *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.3E-827270IPR016679Transcription factor, GATA, plant
SMARTSM004016.6E-16174224IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-14177237No hitNo description
Gene3DG3DSA:3.30.50.106.4E-14178211IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.123178210IPR000679Zinc finger, GATA-type
CDDcd002027.02E-16179236No hitNo description
PfamPF003206.0E-16180214IPR000679Zinc finger, GATA-type
PROSITE patternPS003440180205IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MELWTEARAL KASLRGEAIK HQVVVSEELS RTSSAEDFSV ECFLDFSEEV QEEEEELVSV  60
SSSQEEQEQD CCIFSSQPCI FDQLPAFPVE DVEELEWVSR VVDDCSSQEV SLLLTQTHKT  120
KPSFSSRIPV KPRTKRPRNS LTGDRVWPLV STNQHAAGEQ QWKKKKNKKQ ELAVVFQRRC  180
SHCGTNTTPQ WRTGPVGPKT LCNACGVRFK SGRLCPEYRP ADSPTFSNEI HSNLHRKVLE  240
LRKSKELVEG TGEAITKSDQ VKFGSQVVEK T
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves, less expressed in dark than in light. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454848.11e-176PREDICTED: GATA transcription factor 3
RefseqXP_018454857.11e-176PREDICTED: GATA transcription factor 3
SwissprotQ8L4M61e-141GATA3_ARATH; GATA transcription factor 3
TrEMBLA0A398AI471e-170A0A398AI47_BRACM; GATA transcription factor
TrEMBLM4D4Z51e-170M4D4Z5_BRARP; GATA transcription factor
STRINGBra011552.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57392647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34680.21e-138GATA transcription factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]