PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11046_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SAP
Protein Properties Length: 376aa    MW: 42334.1 Da    PI: 7.329
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11046_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP618.31.6e-188237583454
          SAP  83 wravsrsdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdletr 180
                  w+avsrsd+lwq l+r++W+rt+l++dtWr+e+iy+hrtarnf+tr y +vtl+fdp+dvde   +d+lsCrcl+lsd ylaaGfadG+vrlf l++r
  RrC11046_p1   2 WQAVSRSDHLWQLLSRQVWARTRLMHDTWRDEFIYWHRTARNFQTRSYVHVTLNFDPSDVDE---PDSLSCRCLTLSDLYLAAGFADGTVRLFLLNSR 96 
                  **********************************************************9998...689****************************** PP

          SAP 181 lhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWdaetee 278
                  lhv+t++p  rdr+GrfsravsGivisdsrlvfat+dGdihva+i+g g +++r+a++Gd+vndGalvdf+G+gr+wvGl+aGvpGrafhiWd+  ee
  RrC11046_p1  97 LHVRTLRPPPRDRFGRFSRAVSGIVISDSRLVFATMDGDIHVAEINGLG-SHTRTAFVGDIVNDGALVDFTGCGRYWVGLFAGVPGRAFHIWDCINEE 193
                  ***********************************************88.89********************************************** PP

          SAP 279 lvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeer.rGlivssldasneayvvvdsrGvatvrrvenle 375
                  ++fvGGsltdPeavmGWh+ltelt ++Gr+r+++ etavaCt++r++v+dlrnqgv+++e+ee+ rGliv+++da++++yv++dsrG+a+vr+v + e
  RrC11046_p1 194 TTFVGGSLTDPEAVMGWHTLTELTMSLGRLRISGGETAVACTRWRIMVIDLRNQGVIIGEDEEQrRGLIVTGFDANDQVYVRMDSRGNAIVRKVRTQE 291
                  **********************************************************99888779******************************** PP

          SAP 376 evcrfrvrg.aqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvaddrhvavsss....dgtihlldfga 454
                  +vc+frv++ aqr+v+gCvn+ +al++aggv+rvW++++ ++ylys+rervgev+a+va+drhvav+ss     +tihl+dfga
  RrC11046_p1 292 TVCEFRVSRaAQRRVMGCVNTLHALMCAGGVMRVWDVQRGGEYLYSFRERVGEVDAIVANDRHVAVASSsstaVSTIHLWDFGA 375
                  *******999********************************************************9984444468*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.130.10.104.5E-1068155IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509784.27E-1269141IPR017986WD40-repeat-containing domain
SuperFamilySSF509784.27E-12202372IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.104.5E-10278373IPR015943WD40/YVTN repeat-like-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MWQAVSRSDH LWQLLSRQVW ARTRLMHDTW RDEFIYWHRT ARNFQTRSYV HVTLNFDPSD  60
VDEPDSLSCR CLTLSDLYLA AGFADGTVRL FLLNSRLHVR TLRPPPRDRF GRFSRAVSGI  120
VISDSRLVFA TMDGDIHVAE INGLGSHTRT AFVGDIVNDG ALVDFTGCGR YWVGLFAGVP  180
GRAFHIWDCI NEETTFVGGS LTDPEAVMGW HTLTELTMSL GRLRISGGET AVACTRWRIM  240
VIDLRNQGVI IGEDEEQRRG LIVTGFDAND QVYVRMDSRG NAIVRKVRTQ ETVCEFRVSR  300
AAQRRVMGCV NTLHALMCAG GVMRVWDVQR GGEYLYSFRE RVGEVDAIVA NDRHVAVASS  360
SSTAVSTIHL WDFGAL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018459706.10.0PREDICTED: transcriptional regulator STERILE APETALA
SwissprotQ9FKH10.0SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A397ZJ070.0A0A397ZJ07_BRACM; Uncharacterized protein
STRINGBra035375.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110182634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.10.0SAP family protein
Publications ? help Back to Top
  1. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]