PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 378aa MW: 43246.2 Da PI: 9.0047

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC10932_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.9	4.3e-06	62	84	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H RrC10932_p1 62 YVCEICNQGFQRDQNLQMHRRRH 84 9*********************9 PP
2	zf-C2H2	14.3	0.00012	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k + +s++k H++t+ RrC10932_p1 141 WVCQRCSKGYAVQSDYKAHLKTC 163 58*******************98 PP
3	zf-C2H2	12.7	0.00038	171	189	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +n+ H+ t+ RrC10932_p1 171 DCGRVFSRVENFIEHQDTC 189 9***************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.32E-5	59	85	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-5	61	84	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0052	62	84	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.97	62	84	IPR007087	Zinc finger, C2H2
Pfam	PF12874	0.018	62	80	No hit	No description
PROSITE pattern	PS00028	0	64	84	IPR007087	Zinc finger, C2H2
SMART	SM00355	290	105	135	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	100	141	168	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MIDYEKNNNH QNFPSSSSPD LLLAVNGAAV INKRKRRPAG TPDPDAEVVS LSPKTLLESD 60 RYVCEICNQG FQRDQNLQMH RRRHKVPWKL LKREKKDEEV KKRVYVCPEP TCLHHHPCHA 120 LGDLVGIKKH FRRKHSVLKQ WVCQRCSKGY AVQSDYKAHL KTCGSRGHSC DCGRVFSRVE 180 NFIEHQDTCT IRGPQPTNHR PLHQNKESHA TPSRTFFTPS INPLLHGVPF LRPPQTSHQQ 240 SLAFASSAPF ENLQLQLSIG MTKTQVKRNE KSETSLTMER AIEEARRAEE MRQEARRQRE 300 MAEVDFEKAK NIRKEAKAEL DKAQVVREEA IKRVNATMLE ITCHSCKDMF QLPVLADEST 360 SSLVTCYVSS ATTEGECE

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MIDYEKNNNH QNFPSSSSPD LLLAVNGAAV INKRKRRPAG TPDPDAEVVS LSPKTLLESD  60
RYVCEICNQG FQRDQNLQMH RRRHKVPWKL LKREKKDEEV KKRVYVCPEP TCLHHHPCHA  120
LGDLVGIKKH FRRKHSVLKQ WVCQRCSKGY AVQSDYKAHL KTCGSRGHSC DCGRVFSRVE  180
NFIEHQDTCT IRGPQPTNHR PLHQNKESHA TPSRTFFTPS INPLLHGVPF LRPPQTSHQQ  240
SLAFASSAPF ENLQLQLSIG MTKTQVKRNE KSETSLTMER AIEEARRAEE MRQEARRQRE  300
MAEVDFEKAK NIRKEAKAEL DKAQVVREEA IKRVNATMLE ITCHSCKDMF QLPVLADEST  360
SSLVTCYVSS ATTEGECE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-16	139	205	5	71	Zinc finger protein JACKDAW
5b3h_F	3e-16	139	205	5	71	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD14 in directing leaf and floral organ morphogenesis (PubMed:24039602). Acts cooperatively with IDD15 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:24039602}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018450340.1	0.0	PREDICTED: protein indeterminate-domain 16-like
Swissprot	Q9FRH4	0.0	IDD16_ARATH; Protein indeterminate-domain 16
TrEMBL	A0A078HGY8	0.0	A0A078HGY8_BRANA; BnaA08g19250D protein
TrEMBL	A0A3P6BUW8	0.0	A0A3P6BUW8_BRACM; Uncharacterized protein
TrEMBL	M4D3C7	0.0	M4D3C7_BRARP; Uncharacterized protein
STRING	Bra010981.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM693	28	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25250.1	1e-165	indeterminate(ID)-domain 16

Publications ? help Back to Top
Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]