PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1092_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 220aa    MW: 25596.5 Da    PI: 6.8132
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1092_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.4e-2061114457
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                 ++++++eq++ Le  F  ++++  e++ +LAk+lgL+ rqV vWFqNrRa++k+
  RrC1092_p1  61 KRKLSDEQVRMLEMSFGDEHKLESERKDRLAKELGLDPRQVAVWFQNRRARWKN 114
                 45899***********************************************95 PP
2HD-ZIP_I/II122.32.3e-3960151293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +kr+ls+eqv++LE+sF  e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE +y++Lk+a+++++ e++rL++ev +L+e+l++
   RrC1092_p1  60 RKRKLSDEQVRMLEMSFGDEHKLESERKDRLAKELGLDPRQVAVWFQNRRARWKNKRLEDEYTRLKNAHENVVVEKHRLDSEVLHLKEQLHD 151
                  8****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.92555115IPR001356Homeobox domain
SMARTSM003891.3E-1958119IPR001356Homeobox domain
SuperFamilySSF466895.56E-1858122IPR009057Homeodomain-like
CDDcd000864.01E-1760116No hitNo description
PfamPF000463.0E-1761114IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-2062121IPR009057Homeodomain-like
PRINTSPR000311.2E-58695IPR000047Helix-turn-helix motif
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PRINTSPR000311.2E-595111IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MNNQNVDDHN LLFISQMYPN VYTSSIPQQA GESKPARPRR RRKSKSVAVV GGEGSNGWFR  60
KRKLSDEQVR MLEMSFGDEH KLESERKDRL AKELGLDPRQ VAVWFQNRRA RWKNKRLEDE  120
YTRLKNAHEN VVVEKHRLDS EVLHLKEQLH DAEREIQRLA QRVEGAISNS PISSVSVVAN  180
QTTPFFGDYE VEVGDDSDGY QNLFYSPEYI DGFEWISPFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13944RRRKSK
24062RRKSKSVAVVGGEGSNGWFRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455200.11e-162PREDICTED: homeobox-leucine zipper protein ATHB-21 isoform X1
SwissprotQ9ZU701e-118ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A3P6DCZ71e-134A0A3P6DCZ7_BRAOL; Uncharacterized protein
STRINGBo9g025880.11e-127(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.11e-101homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]