PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10871_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 283aa    MW: 32604.3 Da    PI: 9.0308
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10871_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.67.7e-4781343128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 
                  pGfrFhPt+eel ++yLk+ v gk  ++ evi  ++iy+++PwdLp+  k +e+ewyfF++r++k+ +g r++r+t++gyWkatg+d++++s    ++
  RrC10871_p1   8 PGFRFHPTEEELTDYYLKNMVYGKFSKV-EVIGFLNIYRHDPWDLPRLSKIGEREWYFFVPRERKHGNGGRPSRTTEKGYWKATGSDRKIISLsePKR 104
                  9***********************9999.99***************8778899*************************************98755777 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  ++glkktLvfy+grap g+ktdWvm+eyr+
  RrC10871_p1 105 VIGLKKTLVFYRGRAPGGSKTDWVMNEYRM 134
                  8***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.4996152IPR003441NAC domain
SuperFamilySSF1019417.59E-557152IPR003441NAC domain
PfamPF023653.4E-258134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSKEIELPGF RFHPTEEELT DYYLKNMVYG KFSKVEVIGF LNIYRHDPWD LPRLSKIGER  60
EWYFFVPRER KHGNGGRPSR TTEKGYWKAT GSDRKIISLS EPKRVIGLKK TLVFYRGRAP  120
GGSKTDWVMN EYRMPDNCTL PKDVVLCKIY RKATSLKVLE QRAEMESKMN QTCPNSPLSS  180
SETVSYAGKE EDLMMTSFPF PQASAMQEAN NNFMLQGHTD NAKNEEKQRE TEMKASSSSL  240
KLPCGVLPEL QLPKQGLEWG QDQFLSISPW LQNLTPIINL LNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-44815519168NO APICAL MERISTEM PROTEIN
1ut4_B2e-44815519168NO APICAL MERISTEM PROTEIN
1ut7_A2e-44815519168NO APICAL MERISTEM PROTEIN
1ut7_B2e-44815519168NO APICAL MERISTEM PROTEIN
3swm_A2e-44815522171NAC domain-containing protein 19
3swm_B2e-44815522171NAC domain-containing protein 19
3swm_C2e-44815522171NAC domain-containing protein 19
3swm_D2e-44815522171NAC domain-containing protein 19
3swp_A2e-44815522171NAC domain-containing protein 19
3swp_B2e-44815522171NAC domain-containing protein 19
3swp_C2e-44815522171NAC domain-containing protein 19
3swp_D2e-44815522171NAC domain-containing protein 19
4dul_A2e-44815519168NAC domain-containing protein 19
4dul_B2e-44815519168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533070.0AK353307.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-I17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018457954.10.0PREDICTED: NAC domain-containing protein 35-like
SwissprotQ10S652e-90NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A078GNG80.0A0A078GNG8_BRANA; BnaC09g09210D protein
TrEMBLA0A0D3E3380.0A0A0D3E338_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E1840.0A0A3P6E184_BRAOL; Uncharacterized protein
STRINGBo9g024360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38992860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-176NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]