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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC10871_p1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
NAC |
Protein Properties |
Length: 283aa MW: 32604.3 Da PI: 9.0308 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC10871_p1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 150.6 | 7.7e-47 | 8 | 134 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98
pGfrFhPt+eel ++yLk+ v gk ++ evi ++iy+++PwdLp+ k +e+ewyfF++r++k+ +g r++r+t++gyWkatg+d++++s ++
RrC10871_p1 8 PGFRFHPTEEELTDYYLKNMVYGKFSKV-EVIGFLNIYRHDPWDLPRLSKIGEREWYFFVPRERKHGNGGRPSRTTEKGYWKATGSDRKIISLsePKR 104
9***********************9999.99***************8778899*************************************98755777 PP
NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128
++glkktLvfy+grap g+ktdWvm+eyr+
RrC10871_p1 105 VIGLKKTLVFYRGRAPGGSKTDWVMNEYRM 134
8***************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 283 aa
Download sequence Send
to blast |
MSKEIELPGF RFHPTEEELT DYYLKNMVYG KFSKVEVIGF LNIYRHDPWD LPRLSKIGER 60 EWYFFVPRER KHGNGGRPSR TTEKGYWKAT GSDRKIISLS EPKRVIGLKK TLVFYRGRAP 120 GGSKTDWVMN EYRMPDNCTL PKDVVLCKIY RKATSLKVLE QRAEMESKMN QTCPNSPLSS 180 SETVSYAGKE EDLMMTSFPF PQASAMQEAN NNFMLQGHTD NAKNEEKQRE TEMKASSSSL 240 KLPCGVLPEL QLPKQGLEWG QDQFLSISPW LQNLTPIINL LNF
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 2e-44 | 8 | 155 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-44 | 8 | 155 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-44 | 8 | 155 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-44 | 8 | 155 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-44 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swm_B | 2e-44 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swm_C | 2e-44 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swm_D | 2e-44 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swp_A | 2e-44 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swp_B | 2e-44 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swp_C | 2e-44 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swp_D | 2e-44 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
4dul_A | 2e-44 | 8 | 155 | 19 | 168 | NAC domain-containing protein 19 |
4dul_B | 2e-44 | 8 | 155 | 19 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK353307 | 0.0 | AK353307.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-I17. |