PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

RrC10852_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 197aa MW: 22305.9 Da PI: 8.3961

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC10852_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	119.9	1.4e-37	16	116	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++r+kC+++C+la+yf++e++++f n+hklFG+sn++k++k ++e +r+ am+ l+++A+arardPv G+++++l+l++q+++++ael+ l+ RrC10852_p2 16 ACAACKYQRKKCTENCILARYFAQEKQNQFLNAHKLFGVSNITKFIKGVEECQRDVAMNNLIFHANARARDPVLGVFKIMLDLKNQIACAQAELNFLH 113 7***********************************************************************************************99 PP DUF260 99 eel 101 ++l RrC10852_p2 114 QKL 116 985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	17	No hit	No description
PROSITE profile	PS50891	24.226	15	116	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.2E-34	16	113	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MSLSKFHGGS SSSATACAAC KYQRKKCTEN CILARYFAQE KQNQFLNAHK LFGVSNITKF 60 IKGVEECQRD VAMNNLIFHA NARARDPVLG VFKIMLDLKN QIACAQAELN FLHQKLAMCQ 120 TMVLQQQLGC YSYGDLLEQG DQYLNIDGHV HQEIMQKQSP LNYEMFMEMP IKLEKEKISI 180 PGHKNAVNQI AMPSQVI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-23	10	116	5	111	LOB family transfactor Ramosa2.1
5ly0_B	6e-23	10	116	5	111	LOB family transfactor Ramosa2.1
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018469529.1	1e-132	PREDICTED: LOB domain-containing protein 7
Swissprot	Q9SSM9	3e-67	LBD7_ARATH; LOB domain-containing protein 7
TrEMBL	A0A291LR36	6e-97	A0A291LR36_BRARR; Transcription factor LBD7
TrEMBL	M4CV17	6e-97	M4CV17_BRARP; Uncharacterized protein
STRING	Bra008062.1-P	1e-97	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15466	14	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72980.1	1e-59	LOB domain-containing protein 7