PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC10839_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

S1Fa-like

Protein Properties

Length: 70aa MW: 7831.61 Da PI: 11.072

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC10839_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	140.4	3.7e-44	2	70	2	70
S1FA 2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 ++ k+e+kGlnPGlivllv+ggll+ flvgn+ily+yaqknlPPrkkkPvskkk+k+eklkqGv vPGe RrC10839_p3 2 KQEKIESKGLNPGLIVLLVIGGLLVAFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKLKQGVRVPGE 70 57899***************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	3.8E-39	6	70	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 70 aa Download sequence Send to blast
MKQEKIESKG LNPGLIVLLV IGGLLVAFLV GNFILYTYAQ KNLPPRKKKP VSKKKMKKEK 60 LKQGVRVPGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010104121.2	5e-24	DNA-binding protein S1FA
Refseq	XP_024026346.1	5e-24	DNA-binding protein S1FA
Swissprot	Q42337	2e-17	S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBL	A0A3P5ZUD3	5e-36	A0A3P5ZUD3_BRACM; Uncharacterized protein
STRING	XP_010104121.1	2e-23	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2823	27	69